Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0145 and Shewana3_0146 are separated by 118 nucleotides Shewana3_0146 and Shewana3_0147 are separated by 247 nucleotides
Shewana3_0145: Shewana3_0145 - OmpA/MotB domain-containing protein (RefSeq), at 167,372 to 168,835
_0145
Shewana3_0146: Shewana3_0146 - AbgT putative transporter (RefSeq), at 168,954 to 170,513
_0146
Shewana3_0147: Shewana3_0147 - phosphoenolpyruvate carboxykinase (RefSeq), at 170,761 to 172,302
_0147
Position (kb) 168
169
170
171 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 168.034 kb on - strand, within Shewana3_0145 at 168.048 kb on + strand, within Shewana3_0145 at 168.088 kb on + strand, within Shewana3_0145 at 168.096 kb on - strand, within Shewana3_0145 at 168.101 kb on - strand, within Shewana3_0145 at 168.243 kb on + strand, within Shewana3_0145 at 168.261 kb on - strand, within Shewana3_0145 at 168.276 kb on + strand, within Shewana3_0145 at 168.363 kb on + strand, within Shewana3_0145 at 168.371 kb on - strand, within Shewana3_0145 at 168.371 kb on - strand, within Shewana3_0145 at 168.371 kb on - strand, within Shewana3_0145 at 168.388 kb on + strand, within Shewana3_0145 at 168.424 kb on + strand, within Shewana3_0145 at 168.424 kb on + strand, within Shewana3_0145 at 168.479 kb on + strand, within Shewana3_0145 at 168.493 kb on - strand, within Shewana3_0145 at 168.532 kb on - strand, within Shewana3_0145 at 168.768 kb on + strand at 168.878 kb on + strand at 168.927 kb on - strand at 168.932 kb on - strand at 168.952 kb on + strand at 168.952 kb on + strand at 168.952 kb on + strand at 168.952 kb on + strand at 168.952 kb on + strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 169.041 kb on - strand at 169.234 kb on - strand, within Shewana3_0146 at 169.313 kb on + strand, within Shewana3_0146 at 169.406 kb on + strand, within Shewana3_0146 at 169.413 kb on + strand, within Shewana3_0146 at 169.414 kb on - strand, within Shewana3_0146 at 169.539 kb on - strand, within Shewana3_0146 at 169.595 kb on - strand, within Shewana3_0146 at 169.595 kb on - strand, within Shewana3_0146 at 169.624 kb on + strand, within Shewana3_0146 at 169.941 kb on - strand, within Shewana3_0146 at 170.135 kb on - strand, within Shewana3_0146 at 170.180 kb on + strand, within Shewana3_0146 at 170.245 kb on - strand, within Shewana3_0146 at 170.888 kb on + strand at 170.945 kb on + strand, within Shewana3_0147 at 171.153 kb on - strand, within Shewana3_0147 at 171.153 kb on - strand, within Shewana3_0147 at 171.316 kb on - strand, within Shewana3_0147 at 171.343 kb on + strand, within Shewana3_0147 at 171.368 kb on - strand, within Shewana3_0147 at 171.441 kb on - strand, within Shewana3_0147 at 171.454 kb on + strand, within Shewana3_0147
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 168,034 - Shewana3_0145 0.45 +0.3 168,048 + Shewana3_0145 0.46 -0.3 168,088 + Shewana3_0145 0.49 +1.1 168,096 - Shewana3_0145 0.49 +1.1 168,101 - Shewana3_0145 0.50 +0.7 168,243 + Shewana3_0145 0.59 +0.3 168,261 - Shewana3_0145 0.61 -3.9 168,276 + Shewana3_0145 0.62 +0.3 168,363 + Shewana3_0145 0.68 -2.1 168,371 - Shewana3_0145 0.68 +0.2 168,371 - Shewana3_0145 0.68 +0.1 168,371 - Shewana3_0145 0.68 +0.2 168,388 + Shewana3_0145 0.69 +0.6 168,424 + Shewana3_0145 0.72 -2.5 168,424 + Shewana3_0145 0.72 +0.6 168,479 + Shewana3_0145 0.76 +0.4 168,493 - Shewana3_0145 0.77 -1.2 168,532 - Shewana3_0145 0.79 -0.1 168,768 + +1.0 168,878 + -2.0 168,927 - -0.3 168,932 - +0.0 168,952 + -1.3 168,952 + +0.5 168,952 + +1.2 168,952 + -0.7 168,952 + +0.2 168,960 - +0.2 168,960 - +1.1 168,960 - -2.2 168,960 - -1.7 168,960 - -0.1 168,960 - +0.6 168,960 - -1.4 168,960 - -4.4 168,960 - +0.2 169,041 - -4.0 169,234 - Shewana3_0146 0.18 -2.9 169,313 + Shewana3_0146 0.23 -1.2 169,406 + Shewana3_0146 0.29 -0.9 169,413 + Shewana3_0146 0.29 +0.3 169,414 - Shewana3_0146 0.29 -1.9 169,539 - Shewana3_0146 0.38 -0.1 169,595 - Shewana3_0146 0.41 -1.4 169,595 - Shewana3_0146 0.41 +0.6 169,624 + Shewana3_0146 0.43 +1.0 169,941 - Shewana3_0146 0.63 +0.5 170,135 - Shewana3_0146 0.76 -2.1 170,180 + Shewana3_0146 0.79 -0.8 170,245 - Shewana3_0146 0.83 +0.4 170,888 + -1.4 170,945 + Shewana3_0147 0.12 +0.3 171,153 - Shewana3_0147 0.25 +0.8 171,153 - Shewana3_0147 0.25 +0.9 171,316 - Shewana3_0147 0.36 +0.4 171,343 + Shewana3_0147 0.38 -2.1 171,368 - Shewana3_0147 0.39 +0.6 171,441 - Shewana3_0147 0.44 -2.1 171,454 + Shewana3_0147 0.45 +0.4
Or see this region's nucleotide sequence