Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4232

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4230 and Shewana3_4231 are separated by 203 nucleotidesShewana3_4231 and Shewana3_4232 are separated by 131 nucleotidesShewana3_4232 and Shewana3_4233 are separated by 78 nucleotides Shewana3_4230: Shewana3_4230 - hypothetical protein (RefSeq), at 103,994 to 105,601 _4230 Shewana3_4231: Shewana3_4231 - hypothetical protein (RefSeq), at 105,805 to 106,092 _4231 Shewana3_4232: Shewana3_4232 - hypothetical protein (RefSeq), at 106,224 to 106,649 _4232 Shewana3_4233: Shewana3_4233 - hypothetical protein (RefSeq), at 106,728 to 106,979 _4233 Position (kb) 106 107Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 105.623 kb on - strandat 105.628 kb on - strandat 105.691 kb on + strandat 105.708 kb on + strandat 105.795 kb on + strandat 105.802 kb on + strandat 105.808 kb on - strandat 105.888 kb on + strand, within Shewana3_4231at 105.924 kb on + strand, within Shewana3_4231at 106.291 kb on + strand, within Shewana3_4232at 106.299 kb on - strand, within Shewana3_4232at 106.351 kb on - strand, within Shewana3_4232at 106.704 kb on + strandat 106.712 kb on - strandat 106.822 kb on + strand, within Shewana3_4233at 106.929 kb on - strand, within Shewana3_4233at 107.088 kb on + strandat 107.096 kb on - strandat 107.178 kb on - strandat 107.218 kb on - strandat 107.421 kb on - strandat 107.508 kb on + strandat 107.513 kb on + strandat 107.646 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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105,623 - -0.4
105,628 - -2.1
105,691 + +0.5
105,708 + +1.4
105,795 + +0.3
105,802 + -1.9
105,808 - -1.0
105,888 + Shewana3_4231 0.29 +0.1
105,924 + Shewana3_4231 0.41 -2.3
106,291 + Shewana3_4232 0.16 +1.0
106,299 - Shewana3_4232 0.18 -1.2
106,351 - Shewana3_4232 0.30 -1.4
106,704 + +0.4
106,712 - +0.8
106,822 + Shewana3_4233 0.37 +3.0
106,929 - Shewana3_4233 0.80 +0.0
107,088 + -2.3
107,096 - +0.9
107,178 - -0.1
107,218 - -2.9
107,421 - -1.2
107,508 + +1.2
107,513 + -1.8
107,646 + +1.0

Or see this region's nucleotide sequence