Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS20160

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS20155 and RS_RS20160 are separated by 52 nucleotidesRS_RS20160 and RS_RS20165 are separated by 89 nucleotides RS_RS20155: RS_RS20155 - lipopolysaccharide heptosyltransferase I, at 773,208 to 774,206 _RS20155 RS_RS20160: RS_RS20160 - acyltransferase, at 774,259 to 775,386 _RS20160 RS_RS20165: RS_RS20165 - RNA polymerase subunit sigma-24, at 775,476 to 776,750 _RS20165 Position (kb) 774 775 776Strain fitness (log2 ratio) -1 0 1 2at 773.466 kb on + strand, within RS_RS20155at 773.467 kb on - strand, within RS_RS20155at 773.496 kb on + strand, within RS_RS20155at 773.497 kb on - strand, within RS_RS20155at 773.497 kb on - strand, within RS_RS20155at 773.589 kb on + strand, within RS_RS20155at 773.590 kb on - strand, within RS_RS20155at 773.667 kb on + strand, within RS_RS20155at 773.668 kb on - strand, within RS_RS20155at 773.668 kb on - strand, within RS_RS20155at 773.692 kb on - strand, within RS_RS20155at 773.692 kb on - strand, within RS_RS20155at 774.228 kb on + strandat 774.359 kb on + strandat 774.448 kb on + strand, within RS_RS20160at 774.449 kb on - strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.498 kb on - strand, within RS_RS20160at 774.498 kb on - strand, within RS_RS20160at 774.498 kb on - strand, within RS_RS20160at 774.498 kb on - strand, within RS_RS20160at 774.499 kb on + strand, within RS_RS20160at 774.499 kb on + strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.725 kb on + strand, within RS_RS20160at 774.725 kb on + strand, within RS_RS20160at 774.725 kb on + strand, within RS_RS20160at 774.726 kb on - strand, within RS_RS20160at 774.726 kb on - strand, within RS_RS20160at 774.809 kb on + strand, within RS_RS20160at 774.810 kb on - strand, within RS_RS20160at 774.944 kb on + strand, within RS_RS20160at 774.945 kb on - strand, within RS_RS20160at 774.946 kb on + strand, within RS_RS20160at 774.959 kb on + strand, within RS_RS20160at 774.980 kb on + strand, within RS_RS20160at 774.980 kb on + strand, within RS_RS20160at 775.002 kb on - strand, within RS_RS20160at 775.002 kb on - strand, within RS_RS20160at 775.107 kb on - strand, within RS_RS20160at 775.325 kb on + strandat 775.325 kb on + strandat 775.325 kb on + strandat 775.325 kb on + strandat 775.325 kb on + strandat 775.326 kb on - strandat 775.326 kb on - strandat 775.326 kb on - strandat 775.477 kb on + strandat 775.477 kb on + strandat 775.478 kb on - strandat 775.561 kb on + strandat 775.633 kb on + strand, within RS_RS20165at 775.696 kb on + strand, within RS_RS20165at 775.696 kb on + strand, within RS_RS20165at 775.696 kb on + strand, within RS_RS20165at 775.697 kb on - strand, within RS_RS20165at 775.697 kb on - strand, within RS_RS20165at 775.697 kb on - strand, within RS_RS20165at 775.768 kb on + strand, within RS_RS20165at 775.769 kb on - strand, within RS_RS20165at 775.853 kb on - strand, within RS_RS20165at 776.135 kb on - strand, within RS_RS20165at 776.135 kb on - strand, within RS_RS20165at 776.135 kb on - strand, within RS_RS20165at 776.135 kb on - strand, within RS_RS20165at 776.155 kb on + strand, within RS_RS20165at 776.155 kb on + strand, within RS_RS20165at 776.155 kb on + strand, within RS_RS20165at 776.155 kb on + strand, within RS_RS20165at 776.156 kb on - strand, within RS_RS20165at 776.156 kb on - strand, within RS_RS20165at 776.156 kb on - strand, within RS_RS20165at 776.156 kb on - strand, within RS_RS20165

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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773,466 + RS_RS20155 0.26 +0.4
773,467 - RS_RS20155 0.26 +0.7
773,496 + RS_RS20155 0.29 -0.2
773,497 - RS_RS20155 0.29 -0.6
773,497 - RS_RS20155 0.29 +0.6
773,589 + RS_RS20155 0.38 -0.0
773,590 - RS_RS20155 0.38 -1.1
773,667 + RS_RS20155 0.46 -0.7
773,668 - RS_RS20155 0.46 +0.3
773,668 - RS_RS20155 0.46 +0.5
773,692 - RS_RS20155 0.48 +0.7
773,692 - RS_RS20155 0.48 -0.1
774,228 + -0.8
774,359 + -0.5
774,448 + RS_RS20160 0.17 -0.9
774,449 - RS_RS20160 0.17 -0.0
774,497 + RS_RS20160 0.21 -0.3
774,497 + RS_RS20160 0.21 -0.4
774,497 + RS_RS20160 0.21 -0.1
774,497 + RS_RS20160 0.21 +1.1
774,497 + RS_RS20160 0.21 -0.7
774,497 + RS_RS20160 0.21 -0.6
774,497 + RS_RS20160 0.21 +0.1
774,497 + RS_RS20160 0.21 +0.7
774,498 - RS_RS20160 0.21 -0.5
774,498 - RS_RS20160 0.21 -0.5
774,498 - RS_RS20160 0.21 -1.2
774,498 - RS_RS20160 0.21 +0.2
774,499 + RS_RS20160 0.21 -0.3
774,499 + RS_RS20160 0.21 +1.1
774,500 - RS_RS20160 0.21 -0.5
774,500 - RS_RS20160 0.21 -1.3
774,500 - RS_RS20160 0.21 -1.1
774,500 - RS_RS20160 0.21 -0.6
774,500 - RS_RS20160 0.21 +0.9
774,725 + RS_RS20160 0.41 -0.4
774,725 + RS_RS20160 0.41 +0.2
774,725 + RS_RS20160 0.41 +0.2
774,726 - RS_RS20160 0.41 -0.4
774,726 - RS_RS20160 0.41 +0.8
774,809 + RS_RS20160 0.49 +1.0
774,810 - RS_RS20160 0.49 -0.1
774,944 + RS_RS20160 0.61 -1.1
774,945 - RS_RS20160 0.61 -0.9
774,946 + RS_RS20160 0.61 -0.1
774,959 + RS_RS20160 0.62 +0.2
774,980 + RS_RS20160 0.64 -0.4
774,980 + RS_RS20160 0.64 +0.5
775,002 - RS_RS20160 0.66 -0.3
775,002 - RS_RS20160 0.66 -0.5
775,107 - RS_RS20160 0.75 +0.3
775,325 + +0.0
775,325 + +0.5
775,325 + -0.1
775,325 + +2.4
775,325 + +0.1
775,326 - +0.9
775,326 - +0.1
775,326 - -0.5
775,477 + -0.2
775,477 + -0.8
775,478 - -0.1
775,561 + -0.4
775,633 + RS_RS20165 0.12 -0.5
775,696 + RS_RS20165 0.17 +0.1
775,696 + RS_RS20165 0.17 +0.0
775,696 + RS_RS20165 0.17 -0.7
775,697 - RS_RS20165 0.17 +0.7
775,697 - RS_RS20165 0.17 -0.1
775,697 - RS_RS20165 0.17 +1.2
775,768 + RS_RS20165 0.23 +0.4
775,769 - RS_RS20165 0.23 +0.2
775,853 - RS_RS20165 0.30 -0.5
776,135 - RS_RS20165 0.52 +0.5
776,135 - RS_RS20165 0.52 -0.6
776,135 - RS_RS20165 0.52 +0.1
776,135 - RS_RS20165 0.52 +0.1
776,155 + RS_RS20165 0.53 -0.2
776,155 + RS_RS20165 0.53 -0.3
776,155 + RS_RS20165 0.53 -0.8
776,155 + RS_RS20165 0.53 -0.2
776,156 - RS_RS20165 0.53 +0.5
776,156 - RS_RS20165 0.53 -0.7
776,156 - RS_RS20165 0.53 -0.2
776,156 - RS_RS20165 0.53 -0.1

Or see this region's nucleotide sequence