Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS20140

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS20135 and RS_RS20140 are separated by 3 nucleotidesRS_RS20140 and RS_RS20145 are separated by 14 nucleotidesRS_RS20145 and RS_RS20150 are separated by 97 nucleotides RS_RS20135: RS_RS20135 - phospholipase, at 768,372 to 770,330 _RS20135 RS_RS20140: RS_RS20140 - sel1 repeat family protein, at 770,334 to 771,644 _RS20140 RS_RS20145: RS_RS20145 - PAAR domain-containing protein, at 771,659 to 771,949 _RS20145 RS_RS20150: RS_RS20150 - hypothetical protein, at 772,047 to 772,697 _RS20150 Position (kb) 770 771 772Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 769.440 kb on + strand, within RS_RS20135at 769.440 kb on + strandat 769.440 kb on + strand, within RS_RS20135at 769.440 kb on + strand, within RS_RS20135at 769.441 kb on - strand, within RS_RS20135at 769.476 kb on + strand, within RS_RS20135at 769.477 kb on - strand, within RS_RS20135at 769.477 kb on - strand, within RS_RS20135at 769.477 kb on - strand, within RS_RS20135at 769.492 kb on - strand, within RS_RS20135at 769.640 kb on + strand, within RS_RS20135at 769.640 kb on + strand, within RS_RS20135at 769.640 kb on + strand, within RS_RS20135at 769.640 kb on + strand, within RS_RS20135at 769.640 kb on + strand, within RS_RS20135at 769.640 kb on + strand, within RS_RS20135at 769.640 kb on + strand, within RS_RS20135at 769.641 kb on - strand, within RS_RS20135at 769.641 kb on - strand, within RS_RS20135at 769.641 kb on - strand, within RS_RS20135at 769.641 kb on - strand, within RS_RS20135at 769.641 kb on - strand, within RS_RS20135at 769.641 kb on - strand, within RS_RS20135at 769.645 kb on - strand, within RS_RS20135at 769.645 kb on - strand, within RS_RS20135at 769.892 kb on - strand, within RS_RS20135at 769.892 kb on - strand, within RS_RS20135at 769.892 kb on - strand, within RS_RS20135at 770.007 kb on + strand, within RS_RS20135at 770.007 kb on + strand, within RS_RS20135at 770.007 kb on + strand, within RS_RS20135at 770.007 kb on + strand, within RS_RS20135at 770.008 kb on - strand, within RS_RS20135at 770.008 kb on - strand, within RS_RS20135at 770.008 kb on - strand, within RS_RS20135at 770.008 kb on - strand, within RS_RS20135at 770.013 kb on + strand, within RS_RS20135at 770.014 kb on - strand, within RS_RS20135at 770.014 kb on - strand, within RS_RS20135at 770.014 kb on - strand, within RS_RS20135at 770.319 kb on + strandat 770.319 kb on + strandat 770.319 kb on + strandat 770.320 kb on - strandat 770.320 kb on - strandat 770.323 kb on + strandat 770.324 kb on - strandat 770.324 kb on - strandat 770.423 kb on + strandat 770.423 kb on + strandat 770.526 kb on + strand, within RS_RS20140at 770.527 kb on - strand, within RS_RS20140at 770.574 kb on + strand, within RS_RS20140at 770.575 kb on - strand, within RS_RS20140at 770.575 kb on - strand, within RS_RS20140at 770.577 kb on + strand, within RS_RS20140at 770.595 kb on + strand, within RS_RS20140at 770.595 kb on + strand, within RS_RS20140at 770.604 kb on + strand, within RS_RS20140at 770.604 kb on + strand, within RS_RS20140at 770.604 kb on + strand, within RS_RS20140at 770.604 kb on + strand, within RS_RS20140at 770.604 kb on + strand, within RS_RS20140at 770.604 kb on + strand, within RS_RS20140at 770.604 kb on + strand, within RS_RS20140at 770.604 kb on + strand, within RS_RS20140at 770.604 kb on + strand, within RS_RS20140at 770.605 kb on - strand, within RS_RS20140at 770.605 kb on - strand, within RS_RS20140at 770.605 kb on - strand, within RS_RS20140at 770.605 kb on - strand, within RS_RS20140at 770.605 kb on - strand, within RS_RS20140at 770.727 kb on + strand, within RS_RS20140at 770.727 kb on + strand, within RS_RS20140at 770.728 kb on - strand, within RS_RS20140at 770.728 kb on - strand, within RS_RS20140at 770.742 kb on + strand, within RS_RS20140at 770.742 kb on + strand, within RS_RS20140at 770.757 kb on + strand, within RS_RS20140at 770.793 kb on + strand, within RS_RS20140at 770.793 kb on + strand, within RS_RS20140at 770.793 kb on + strand, within RS_RS20140at 770.794 kb on - strand, within RS_RS20140at 770.794 kb on - strand, within RS_RS20140at 770.838 kb on + strand, within RS_RS20140at 770.839 kb on - strand, within RS_RS20140at 770.839 kb on - strand, within RS_RS20140at 770.839 kb on - strand, within RS_RS20140at 770.936 kb on + strand, within RS_RS20140at 770.936 kb on + strand, within RS_RS20140at 770.936 kb on + strand, within RS_RS20140at 770.936 kb on + strand, within RS_RS20140at 770.937 kb on - strand, within RS_RS20140at 770.937 kb on - strand, within RS_RS20140at 770.937 kb on - strand, within RS_RS20140at 770.937 kb on - strand, within RS_RS20140at 770.937 kb on - strand, within RS_RS20140at 770.937 kb on - strand, within RS_RS20140at 770.937 kb on - strand, within RS_RS20140at 770.953 kb on + strand, within RS_RS20140at 770.953 kb on + strand, within RS_RS20140at 771.081 kb on + strand, within RS_RS20140at 771.082 kb on - strand, within RS_RS20140at 771.082 kb on - strand, within RS_RS20140at 771.082 kb on - strand, within RS_RS20140at 771.082 kb on - strand, within RS_RS20140at 771.543 kb on + strandat 771.543 kb on + strandat 771.627 kb on + strandat 771.628 kb on - strandat 771.642 kb on + strandat 771.643 kb on - strandat 771.643 kb on - strandat 771.668 kb on + strandat 771.668 kb on + strandat 771.668 kb on + strandat 771.668 kb on + strandat 771.668 kb on + strandat 771.668 kb on + strandat 771.668 kb on + strandat 771.668 kb on + strandat 771.669 kb on - strandat 771.669 kb on - strandat 771.669 kb on - strandat 771.669 kb on - strandat 771.707 kb on - strand, within RS_RS20145at 771.742 kb on + strand, within RS_RS20145at 771.742 kb on + strand, within RS_RS20145at 771.947 kb on + strandat 771.947 kb on + strandat 771.948 kb on - strandat 771.948 kb on - strandat 771.948 kb on - strandat 772.041 kb on + strandat 772.067 kb on + strandat 772.068 kb on - strandat 772.075 kb on + strandat 772.075 kb on + strandat 772.075 kb on + strandat 772.075 kb on + strandat 772.168 kb on + strand, within RS_RS20150at 772.169 kb on - strand, within RS_RS20150at 772.169 kb on - strand, within RS_RS20150at 772.220 kb on - strand, within RS_RS20150at 772.220 kb on - strand, within RS_RS20150at 772.242 kb on + strand, within RS_RS20150at 772.242 kb on + strand, within RS_RS20150at 772.242 kb on + strand, within RS_RS20150at 772.242 kb on + strand, within RS_RS20150at 772.381 kb on - strand, within RS_RS20150at 772.381 kb on - strand, within RS_RS20150at 772.381 kb on - strand, within RS_RS20150at 772.381 kb on - strand, within RS_RS20150

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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769,440 + RS_RS20135 0.55 +0.2
769,440 + +1.5
769,440 + RS_RS20135 0.55 +0.5
769,440 + RS_RS20135 0.55 +1.0
769,441 - RS_RS20135 0.55 -0.1
769,476 + RS_RS20135 0.56 -1.2
769,477 - RS_RS20135 0.56 +0.6
769,477 - RS_RS20135 0.56 +0.0
769,477 - RS_RS20135 0.56 +0.4
769,492 - RS_RS20135 0.57 -0.5
769,640 + RS_RS20135 0.65 -0.0
769,640 + RS_RS20135 0.65 -0.3
769,640 + RS_RS20135 0.65 -1.4
769,640 + RS_RS20135 0.65 -0.0
769,640 + RS_RS20135 0.65 -0.2
769,640 + RS_RS20135 0.65 +0.4
769,640 + RS_RS20135 0.65 -0.7
769,641 - RS_RS20135 0.65 +0.2
769,641 - RS_RS20135 0.65 -1.6
769,641 - RS_RS20135 0.65 -1.1
769,641 - RS_RS20135 0.65 +0.4
769,641 - RS_RS20135 0.65 +0.1
769,641 - RS_RS20135 0.65 -0.3
769,645 - RS_RS20135 0.65 -0.1
769,645 - RS_RS20135 0.65 +0.0
769,892 - RS_RS20135 0.78 +0.1
769,892 - RS_RS20135 0.78 +0.2
769,892 - RS_RS20135 0.78 -1.0
770,007 + RS_RS20135 0.83 +0.1
770,007 + RS_RS20135 0.83 -0.2
770,007 + RS_RS20135 0.83 +0.5
770,007 + RS_RS20135 0.83 -1.0
770,008 - RS_RS20135 0.84 -0.1
770,008 - RS_RS20135 0.84 +0.7
770,008 - RS_RS20135 0.84 -0.9
770,008 - RS_RS20135 0.84 -0.2
770,013 + RS_RS20135 0.84 +0.2
770,014 - RS_RS20135 0.84 -1.6
770,014 - RS_RS20135 0.84 +0.1
770,014 - RS_RS20135 0.84 -0.8
770,319 + +0.4
770,319 + -0.6
770,319 + +0.2
770,320 - -0.3
770,320 - -0.6
770,323 + -0.8
770,324 - +0.2
770,324 - -0.7
770,423 + -3.8
770,423 + -2.9
770,526 + RS_RS20140 0.15 -5.7
770,527 - RS_RS20140 0.15 -1.4
770,574 + RS_RS20140 0.18 -3.0
770,575 - RS_RS20140 0.18 -5.1
770,575 - RS_RS20140 0.18 -3.6
770,577 + RS_RS20140 0.19 -3.3
770,595 + RS_RS20140 0.20 -0.9
770,595 + RS_RS20140 0.20 -2.8
770,604 + RS_RS20140 0.21 -4.3
770,604 + RS_RS20140 0.21 -3.2
770,604 + RS_RS20140 0.21 -3.2
770,604 + RS_RS20140 0.21 -2.8
770,604 + RS_RS20140 0.21 -3.4
770,604 + RS_RS20140 0.21 -4.4
770,604 + RS_RS20140 0.21 -3.4
770,604 + RS_RS20140 0.21 -3.2
770,604 + RS_RS20140 0.21 -4.6
770,605 - RS_RS20140 0.21 -4.8
770,605 - RS_RS20140 0.21 -3.8
770,605 - RS_RS20140 0.21 -1.9
770,605 - RS_RS20140 0.21 -4.2
770,605 - RS_RS20140 0.21 -2.9
770,727 + RS_RS20140 0.30 -5.1
770,727 + RS_RS20140 0.30 -3.7
770,728 - RS_RS20140 0.30 -1.7
770,728 - RS_RS20140 0.30 -1.4
770,742 + RS_RS20140 0.31 -4.4
770,742 + RS_RS20140 0.31 -3.7
770,757 + RS_RS20140 0.32 -3.1
770,793 + RS_RS20140 0.35 -3.8
770,793 + RS_RS20140 0.35 -3.5
770,793 + RS_RS20140 0.35 -2.9
770,794 - RS_RS20140 0.35 -3.1
770,794 - RS_RS20140 0.35 -3.2
770,838 + RS_RS20140 0.38 -3.1
770,839 - RS_RS20140 0.39 -2.8
770,839 - RS_RS20140 0.39 -4.7
770,839 - RS_RS20140 0.39 -3.8
770,936 + RS_RS20140 0.46 -3.9
770,936 + RS_RS20140 0.46 -3.8
770,936 + RS_RS20140 0.46 -3.0
770,936 + RS_RS20140 0.46 -2.2
770,937 - RS_RS20140 0.46 -3.5
770,937 - RS_RS20140 0.46 -4.8
770,937 - RS_RS20140 0.46 -4.9
770,937 - RS_RS20140 0.46 -3.8
770,937 - RS_RS20140 0.46 -1.9
770,937 - RS_RS20140 0.46 -4.8
770,937 - RS_RS20140 0.46 -3.8
770,953 + RS_RS20140 0.47 -3.8
770,953 + RS_RS20140 0.47 -1.3
771,081 + RS_RS20140 0.57 -5.1
771,082 - RS_RS20140 0.57 -3.6
771,082 - RS_RS20140 0.57 -2.3
771,082 - RS_RS20140 0.57 -4.4
771,082 - RS_RS20140 0.57 -2.1
771,543 + -0.1
771,543 + -0.3
771,627 + +0.3
771,628 - +0.2
771,642 + -0.2
771,643 - -0.5
771,643 - -0.3
771,668 + +0.8
771,668 + +0.3
771,668 + -0.0
771,668 + +0.2
771,668 + -0.4
771,668 + +0.3
771,668 + -0.2
771,668 + -0.6
771,669 - -0.0
771,669 - -0.3
771,669 - +0.3
771,669 - -0.1
771,707 - RS_RS20145 0.16 +0.4
771,742 + RS_RS20145 0.29 -0.4
771,742 + RS_RS20145 0.29 +0.7
771,947 + +0.0
771,947 + -0.1
771,948 - -0.4
771,948 - -1.4
771,948 - +0.3
772,041 + +0.3
772,067 + -0.2
772,068 - +0.0
772,075 + +0.6
772,075 + +0.7
772,075 + -0.7
772,075 + +0.3
772,168 + RS_RS20150 0.19 -0.0
772,169 - RS_RS20150 0.19 -0.8
772,169 - RS_RS20150 0.19 -1.3
772,220 - RS_RS20150 0.27 +0.1
772,220 - RS_RS20150 0.27 +0.0
772,242 + RS_RS20150 0.30 -0.0
772,242 + RS_RS20150 0.30 -1.0
772,242 + RS_RS20150 0.30 +0.4
772,242 + RS_RS20150 0.30 +0.6
772,381 - RS_RS20150 0.51 -0.1
772,381 - RS_RS20150 0.51 -0.7
772,381 - RS_RS20150 0.51 -1.4
772,381 - RS_RS20150 0.51 -0.0

Or see this region's nucleotide sequence