Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19520 and RS_RS19525 are separated by 26 nucleotides RS_RS19525 and RS_RS19530 are separated by 10 nucleotides
RS_RS19520: RS_RS19520 - TolC family protein, at 612,400 to 613,725
_RS19520
RS_RS19525: RS_RS19525 - efflux RND transporter periplasmic adaptor subunit, at 613,752 to 614,966
_RS19525
RS_RS19530: RS_RS19530 - CusA/CzcA family heavy metal efflux RND transporter, at 614,977 to 618,171
_RS19530
Position (kb) 613
614
615 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 613.567 kb on + strand, within RS_RS19520 at 613.661 kb on - strand at 614.616 kb on + strand, within RS_RS19525 at 614.716 kb on + strand, within RS_RS19525 at 614.716 kb on + strand, within RS_RS19525 at 614.716 kb on + strand, within RS_RS19525 at 614.919 kb on + strand at 614.919 kb on + strand at 614.919 kb on + strand at 614.919 kb on + strand at 614.920 kb on - strand at 614.920 kb on - strand at 614.920 kb on - strand at 615.061 kb on + strand at 615.061 kb on + strand at 615.067 kb on + strand at 615.067 kb on + strand at 615.068 kb on - strand at 615.068 kb on - strand at 615.068 kb on - strand at 615.068 kb on - strand at 615.069 kb on + strand at 615.070 kb on - strand at 615.175 kb on + strand at 615.176 kb on - strand at 615.286 kb on + strand at 615.286 kb on + strand at 615.286 kb on + strand at 615.286 kb on + strand at 615.286 kb on + strand at 615.287 kb on - strand at 615.287 kb on - strand at 615.394 kb on + strand, within RS_RS19530 at 615.395 kb on - strand, within RS_RS19530 at 615.395 kb on - strand, within RS_RS19530 at 615.448 kb on + strand, within RS_RS19530 at 615.448 kb on + strand, within RS_RS19530 at 615.592 kb on + strand, within RS_RS19530 at 615.592 kb on + strand, within RS_RS19530 at 615.593 kb on - strand, within RS_RS19530 at 615.658 kb on + strand, within RS_RS19530 at 615.659 kb on - strand, within RS_RS19530 at 615.682 kb on + strand, within RS_RS19530 at 615.682 kb on + strand, within RS_RS19530 at 615.682 kb on + strand, within RS_RS19530 at 615.682 kb on + strand, within RS_RS19530 at 615.682 kb on + strand, within RS_RS19530 at 615.964 kb on + strand, within RS_RS19530 at 615.965 kb on - strand, within RS_RS19530 at 615.965 kb on - strand, within RS_RS19530
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 613,567 + RS_RS19520 0.88 -1.2 613,661 - -0.8 614,616 + RS_RS19525 0.71 -0.1 614,716 + RS_RS19525 0.79 -1.4 614,716 + RS_RS19525 0.79 -1.4 614,716 + RS_RS19525 0.79 -0.1 614,919 + -0.3 614,919 + -0.4 614,919 + -0.4 614,919 + -4.1 614,920 - -0.6 614,920 - +0.3 614,920 - -1.4 615,061 + -0.2 615,061 + -1.0 615,067 + -1.9 615,067 + -1.6 615,068 - -0.7 615,068 - -0.8 615,068 - -1.6 615,068 - -0.6 615,069 + -1.2 615,070 - -1.4 615,175 + -1.0 615,176 - +0.2 615,286 + -0.1 615,286 + -1.5 615,286 + -1.8 615,286 + -0.6 615,286 + -2.2 615,287 - -0.3 615,287 - +0.6 615,394 + RS_RS19530 0.13 +1.6 615,395 - RS_RS19530 0.13 -1.1 615,395 - RS_RS19530 0.13 -0.9 615,448 + RS_RS19530 0.15 +0.0 615,448 + RS_RS19530 0.15 -0.6 615,592 + RS_RS19530 0.19 +0.1 615,592 + RS_RS19530 0.19 +0.6 615,593 - RS_RS19530 0.19 -1.1 615,658 + RS_RS19530 0.21 +0.2 615,659 - RS_RS19530 0.21 -2.0 615,682 + RS_RS19530 0.22 -2.0 615,682 + RS_RS19530 0.22 -1.2 615,682 + RS_RS19530 0.22 -1.5 615,682 + RS_RS19530 0.22 +0.7 615,682 + RS_RS19530 0.22 -2.1 615,964 + RS_RS19530 0.31 -2.2 615,965 - RS_RS19530 0.31 -0.5 615,965 - RS_RS19530 0.31 -0.2
Or see this region's nucleotide sequence