Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS08000

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS07995 and RS_RS08000 are separated by 203 nucleotidesRS_RS08000 and RS_RS08005 are separated by 12 nucleotides RS_RS07995: RS_RS07995 - DNA polymerase IV, at 1,702,478 to 1,703,566 _RS07995 RS_RS08000: RS_RS08000 - amino acid permease, at 1,703,770 to 1,705,200 _RS08000 RS_RS08005: RS_RS08005 - DUF1223 domain-containing protein, at 1,705,213 to 1,706,016 _RS08005 Position (kb) 1703 1704 1705 1706Strain fitness (log2 ratio) -2 -1 0 1at 1702.770 kb on - strand, within RS_RS07995at 1702.808 kb on + strand, within RS_RS07995at 1703.237 kb on + strand, within RS_RS07995at 1703.237 kb on + strand, within RS_RS07995at 1703.384 kb on - strand, within RS_RS07995at 1704.041 kb on - strand, within RS_RS08000at 1704.041 kb on - strand, within RS_RS08000at 1704.042 kb on + strand, within RS_RS08000at 1704.042 kb on + strand, within RS_RS08000at 1704.042 kb on + strand, within RS_RS08000at 1704.043 kb on - strand, within RS_RS08000at 1704.043 kb on - strand, within RS_RS08000at 1704.043 kb on - strand, within RS_RS08000at 1704.046 kb on + strand, within RS_RS08000at 1704.046 kb on + strand, within RS_RS08000at 1704.046 kb on + strand, within RS_RS08000at 1704.047 kb on - strand, within RS_RS08000at 1704.052 kb on + strand, within RS_RS08000at 1704.151 kb on + strand, within RS_RS08000at 1704.571 kb on + strand, within RS_RS08000at 1704.838 kb on - strand, within RS_RS08000at 1704.909 kb on + strand, within RS_RS08000at 1704.910 kb on - strand, within RS_RS08000at 1705.270 kb on + strandat 1705.270 kb on + strandat 1705.270 kb on + strandat 1705.504 kb on + strand, within RS_RS08005at 1705.535 kb on - strand, within RS_RS08005at 1705.679 kb on + strand, within RS_RS08005at 1705.680 kb on - strand, within RS_RS08005at 1705.776 kb on - strand, within RS_RS08005at 1705.877 kb on + strand, within RS_RS08005at 1705.878 kb on - strand, within RS_RS08005at 1705.900 kb on - strand, within RS_RS08005at 1705.997 kb on - strandat 1705.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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1,702,770 - RS_RS07995 0.27 -0.1
1,702,808 + RS_RS07995 0.30 -0.3
1,703,237 + RS_RS07995 0.70 -0.4
1,703,237 + RS_RS07995 0.70 +0.4
1,703,384 - RS_RS07995 0.83 -0.3
1,704,041 - RS_RS08000 0.19 +0.0
1,704,041 - RS_RS08000 0.19 -0.7
1,704,042 + RS_RS08000 0.19 -1.0
1,704,042 + RS_RS08000 0.19 +0.5
1,704,042 + RS_RS08000 0.19 -0.8
1,704,043 - RS_RS08000 0.19 +0.3
1,704,043 - RS_RS08000 0.19 -1.0
1,704,043 - RS_RS08000 0.19 -0.2
1,704,046 + RS_RS08000 0.19 -1.0
1,704,046 + RS_RS08000 0.19 -0.9
1,704,046 + RS_RS08000 0.19 -0.7
1,704,047 - RS_RS08000 0.19 -0.5
1,704,052 + RS_RS08000 0.20 -1.7
1,704,151 + RS_RS08000 0.27 +0.6
1,704,571 + RS_RS08000 0.56 -0.4
1,704,838 - RS_RS08000 0.75 -0.3
1,704,909 + RS_RS08000 0.80 +0.2
1,704,910 - RS_RS08000 0.80 -0.1
1,705,270 + +0.4
1,705,270 + -0.1
1,705,270 + -0.6
1,705,504 + RS_RS08005 0.36 +0.8
1,705,535 - RS_RS08005 0.40 -2.0
1,705,679 + RS_RS08005 0.58 -0.7
1,705,680 - RS_RS08005 0.58 -0.5
1,705,776 - RS_RS08005 0.70 -0.7
1,705,877 + RS_RS08005 0.83 -0.5
1,705,878 - RS_RS08005 0.83 +0.2
1,705,900 - RS_RS08005 0.85 -0.0
1,705,997 - +0.0
1,705,997 - -0.2

Or see this region's nucleotide sequence