Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02940 and RS_RS02945 are separated by 340 nucleotides RS_RS02945 and RS_RS02950 are separated by 209 nucleotides
RS_RS02940: RS_RS02940 - hypothetical protein, at 630,794 to 631,654
_RS02940
RS_RS02945: RS_RS02945 - PAS domain S-box protein, at 631,995 to 634,706
_RS02945
RS_RS02950: RS_RS02950 - amidase, at 634,916 to 636,262
_RS02950
Position (kb) 631
632
633
634
635 Strain fitness (log2 ratio) -1
0
1 at 631.078 kb on + strand, within RS_RS02940 at 631.078 kb on + strand, within RS_RS02940 at 631.079 kb on - strand, within RS_RS02940 at 631.079 kb on - strand, within RS_RS02940 at 631.079 kb on - strand, within RS_RS02940 at 631.082 kb on + strand, within RS_RS02940 at 631.083 kb on - strand, within RS_RS02940 at 631.269 kb on - strand, within RS_RS02940 at 631.317 kb on - strand, within RS_RS02940 at 631.481 kb on - strand, within RS_RS02940 at 631.565 kb on + strand, within RS_RS02940 at 631.786 kb on - strand at 631.893 kb on - strand at 631.906 kb on + strand at 631.907 kb on - strand at 631.994 kb on + strand at 631.994 kb on + strand at 631.995 kb on - strand at 632.118 kb on + strand at 632.119 kb on - strand at 632.800 kb on - strand, within RS_RS02945 at 632.892 kb on + strand, within RS_RS02945 at 632.895 kb on + strand, within RS_RS02945 at 632.896 kb on - strand, within RS_RS02945 at 633.297 kb on + strand, within RS_RS02945 at 633.438 kb on + strand, within RS_RS02945 at 633.439 kb on - strand, within RS_RS02945 at 633.450 kb on + strand, within RS_RS02945 at 633.451 kb on - strand, within RS_RS02945 at 633.765 kb on + strand, within RS_RS02945 at 633.766 kb on - strand, within RS_RS02945 at 633.766 kb on - strand, within RS_RS02945 at 633.768 kb on + strand, within RS_RS02945 at 633.769 kb on - strand, within RS_RS02945 at 633.855 kb on + strand, within RS_RS02945 at 633.855 kb on + strand, within RS_RS02945 at 633.855 kb on + strand, within RS_RS02945 at 633.855 kb on + strand, within RS_RS02945 at 633.856 kb on - strand, within RS_RS02945 at 634.662 kb on + strand at 634.663 kb on - strand at 634.885 kb on + strand at 634.886 kb on - strand at 634.886 kb on - strand at 635.296 kb on - strand, within RS_RS02950 at 635.497 kb on - strand, within RS_RS02950
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 631,078 + RS_RS02940 0.33 -0.1 631,078 + RS_RS02940 0.33 +0.3 631,079 - RS_RS02940 0.33 -0.8 631,079 - RS_RS02940 0.33 -0.0 631,079 - RS_RS02940 0.33 -0.5 631,082 + RS_RS02940 0.33 +0.8 631,083 - RS_RS02940 0.34 +0.3 631,269 - RS_RS02940 0.55 +0.1 631,317 - RS_RS02940 0.61 -0.1 631,481 - RS_RS02940 0.80 -0.5 631,565 + RS_RS02940 0.90 +0.2 631,786 - -0.0 631,893 - +1.3 631,906 + -0.5 631,907 - +0.0 631,994 + +0.1 631,994 + +0.2 631,995 - +0.1 632,118 + +0.6 632,119 - +0.4 632,800 - RS_RS02945 0.30 -0.3 632,892 + RS_RS02945 0.33 +0.3 632,895 + RS_RS02945 0.33 -0.2 632,896 - RS_RS02945 0.33 +0.5 633,297 + RS_RS02945 0.48 +0.3 633,438 + RS_RS02945 0.53 +0.3 633,439 - RS_RS02945 0.53 +0.3 633,450 + RS_RS02945 0.54 -1.2 633,451 - RS_RS02945 0.54 +0.2 633,765 + RS_RS02945 0.65 -0.4 633,766 - RS_RS02945 0.65 -0.3 633,766 - RS_RS02945 0.65 +0.7 633,768 + RS_RS02945 0.65 +0.5 633,769 - RS_RS02945 0.65 +1.5 633,855 + RS_RS02945 0.69 -0.2 633,855 + RS_RS02945 0.69 -0.6 633,855 + RS_RS02945 0.69 +0.3 633,855 + RS_RS02945 0.69 -0.5 633,856 - RS_RS02945 0.69 +0.1 634,662 + -0.8 634,663 - +0.3 634,885 + +0.8 634,886 - -0.8 634,886 - +0.2 635,296 - RS_RS02950 0.28 +0.8 635,497 - RS_RS02950 0.43 +0.3
Or see this region's nucleotide sequence