Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00140 and RS_RS00145 are separated by 4 nucleotides RS_RS00145 and RS_RS00150 are separated by 150 nucleotides
RS_RS00140: RS_RS00140 - NAD-dependent succinate-semialdehyde dehydrogenase, at 32,580 to 34,073
_RS00140
RS_RS00145: RS_RS00145 - 4-aminobutyrate--2-oxoglutarate transaminase, at 34,078 to 35,358
_RS00145
RS_RS00150: RS_RS00150 - PLP-dependent aminotransferase family protein, at 35,509 to 37,005
_RS00150
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 33.139 kb on + strand, within RS_RS00140 at 33.139 kb on + strand, within RS_RS00140 at 33.139 kb on + strand, within RS_RS00140 at 33.139 kb on + strand, within RS_RS00140 at 33.140 kb on - strand, within RS_RS00140 at 33.140 kb on - strand, within RS_RS00140 at 33.140 kb on - strand, within RS_RS00140 at 33.157 kb on + strand, within RS_RS00140 at 33.158 kb on - strand, within RS_RS00140 at 33.484 kb on + strand, within RS_RS00140 at 33.484 kb on + strand, within RS_RS00140 at 33.485 kb on - strand, within RS_RS00140 at 33.485 kb on - strand, within RS_RS00140 at 33.665 kb on - strand, within RS_RS00140 at 34.123 kb on + strand at 34.173 kb on - strand at 34.173 kb on - strand at 34.275 kb on + strand, within RS_RS00145 at 34.275 kb on + strand, within RS_RS00145 at 34.451 kb on + strand, within RS_RS00145 at 34.451 kb on + strand, within RS_RS00145 at 34.451 kb on + strand, within RS_RS00145 at 34.452 kb on - strand, within RS_RS00145 at 34.456 kb on - strand, within RS_RS00145 at 34.700 kb on + strand, within RS_RS00145 at 34.700 kb on + strand, within RS_RS00145 at 34.701 kb on - strand, within RS_RS00145 at 34.844 kb on + strand, within RS_RS00145 at 34.845 kb on - strand, within RS_RS00145 at 34.845 kb on - strand, within RS_RS00145 at 34.845 kb on - strand, within RS_RS00145 at 34.845 kb on - strand, within RS_RS00145 at 34.880 kb on + strand, within RS_RS00145 at 34.880 kb on + strand, within RS_RS00145 at 34.880 kb on + strand, within RS_RS00145 at 35.087 kb on + strand, within RS_RS00145 at 35.087 kb on + strand, within RS_RS00145 at 35.088 kb on - strand, within RS_RS00145 at 35.096 kb on + strand, within RS_RS00145 at 35.097 kb on - strand, within RS_RS00145 at 35.216 kb on + strand, within RS_RS00145 at 35.217 kb on - strand, within RS_RS00145 at 35.217 kb on - strand, within RS_RS00145 at 35.521 kb on + strand at 35.521 kb on + strand at 35.521 kb on + strand at 35.522 kb on - strand at 35.722 kb on + strand, within RS_RS00150 at 35.722 kb on + strand, within RS_RS00150 at 35.722 kb on + strand, within RS_RS00150 at 35.722 kb on + strand, within RS_RS00150 at 35.722 kb on + strand, within RS_RS00150 at 35.723 kb on - strand, within RS_RS00150 at 35.723 kb on - strand, within RS_RS00150 at 35.723 kb on - strand, within RS_RS00150 at 35.723 kb on - strand, within RS_RS00150 at 35.723 kb on - strand, within RS_RS00150 at 36.031 kb on + strand, within RS_RS00150 at 36.032 kb on - strand, within RS_RS00150 at 36.032 kb on - strand, within RS_RS00150 at 36.197 kb on - strand, within RS_RS00150
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 33,139 + RS_RS00140 0.37 -0.5 33,139 + RS_RS00140 0.37 -1.5 33,139 + RS_RS00140 0.37 -1.4 33,139 + RS_RS00140 0.37 -2.1 33,140 - RS_RS00140 0.37 -0.7 33,140 - RS_RS00140 0.37 -3.1 33,140 - RS_RS00140 0.37 -1.7 33,157 + RS_RS00140 0.39 -0.3 33,158 - RS_RS00140 0.39 -0.5 33,484 + RS_RS00140 0.61 -0.7 33,484 + RS_RS00140 0.61 -1.6 33,485 - RS_RS00140 0.61 -1.7 33,485 - RS_RS00140 0.61 -3.1 33,665 - RS_RS00140 0.73 -1.4 34,123 + -0.4 34,173 - -0.1 34,173 - -0.7 34,275 + RS_RS00145 0.15 -0.5 34,275 + RS_RS00145 0.15 -0.4 34,451 + RS_RS00145 0.29 +0.1 34,451 + RS_RS00145 0.29 -0.9 34,451 + RS_RS00145 0.29 -0.5 34,452 - RS_RS00145 0.29 -0.2 34,456 - RS_RS00145 0.30 +0.1 34,700 + RS_RS00145 0.49 -0.8 34,700 + RS_RS00145 0.49 +0.3 34,701 - RS_RS00145 0.49 -0.3 34,844 + RS_RS00145 0.60 -0.6 34,845 - RS_RS00145 0.60 +1.0 34,845 - RS_RS00145 0.60 +0.1 34,845 - RS_RS00145 0.60 +0.0 34,845 - RS_RS00145 0.60 -1.2 34,880 + RS_RS00145 0.63 -0.3 34,880 + RS_RS00145 0.63 -0.9 34,880 + RS_RS00145 0.63 +0.1 35,087 + RS_RS00145 0.79 -0.5 35,087 + RS_RS00145 0.79 -0.4 35,088 - RS_RS00145 0.79 +0.2 35,096 + RS_RS00145 0.79 -0.3 35,097 - RS_RS00145 0.80 +0.2 35,216 + RS_RS00145 0.89 -0.5 35,217 - RS_RS00145 0.89 -0.4 35,217 - RS_RS00145 0.89 -0.6 35,521 + -2.2 35,521 + +0.1 35,521 + -0.0 35,522 - +0.7 35,722 + RS_RS00150 0.14 -0.3 35,722 + RS_RS00150 0.14 -0.1 35,722 + RS_RS00150 0.14 -0.4 35,722 + RS_RS00150 0.14 -0.0 35,722 + RS_RS00150 0.14 +0.0 35,723 - RS_RS00150 0.14 +0.0 35,723 - RS_RS00150 0.14 -0.4 35,723 - RS_RS00150 0.14 -0.4 35,723 - RS_RS00150 0.14 +0.4 35,723 - RS_RS00150 0.14 -0.3 36,031 + RS_RS00150 0.35 +0.0 36,032 - RS_RS00150 0.35 +1.0 36,032 - RS_RS00150 0.35 -0.0 36,197 - RS_RS00150 0.46 +1.1
Or see this region's nucleotide sequence