Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_743

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_742 and Pf6N2E2_743 are separated by 108 nucleotidesPf6N2E2_743 and Pf6N2E2_744 are separated by 141 nucleotides Pf6N2E2_742 - 4-hydroxycinnamoyl CoA hydratase/lyase (Enoyl-CoA hydratase/lyase) (EC 4.2.1.17), at 851,780 to 852,610 _742 Pf6N2E2_743 - Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28), at 852,719 to 854,167 _743 Pf6N2E2_744 - Trans-feruloyl-CoA synthase (EC 6.2.1.34), at 854,309 to 856,186 _744 Position (kb) 852 853 854 855Strain fitness (log2 ratio) -2 -1 0 1 2at 851.737 kb on + strandat 851.789 kb on + strandat 851.790 kb on - strandat 851.790 kb on - strandat 851.947 kb on - strand, within Pf6N2E2_742at 852.002 kb on + strand, within Pf6N2E2_742at 852.003 kb on - strand, within Pf6N2E2_742at 852.092 kb on + strand, within Pf6N2E2_742at 852.092 kb on + strand, within Pf6N2E2_742at 852.092 kb on + strand, within Pf6N2E2_742at 852.092 kb on + strand, within Pf6N2E2_742at 852.093 kb on - strand, within Pf6N2E2_742at 852.093 kb on - strand, within Pf6N2E2_742at 852.093 kb on - strand, within Pf6N2E2_742at 852.284 kb on + strand, within Pf6N2E2_742at 852.284 kb on + strandat 852.284 kb on + strand, within Pf6N2E2_742at 852.285 kb on - strand, within Pf6N2E2_742at 852.285 kb on - strand, within Pf6N2E2_742at 852.287 kb on + strand, within Pf6N2E2_742at 852.287 kb on + strand, within Pf6N2E2_742at 852.287 kb on + strand, within Pf6N2E2_742at 852.287 kb on + strand, within Pf6N2E2_742at 852.287 kb on + strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.488 kb on + strand, within Pf6N2E2_742at 852.488 kb on + strand, within Pf6N2E2_742at 852.489 kb on - strand, within Pf6N2E2_742at 852.489 kb on - strand, within Pf6N2E2_742at 852.599 kb on + strandat 852.599 kb on + strandat 852.599 kb on + strandat 852.599 kb on + strandat 852.600 kb on - strandat 852.600 kb on - strandat 852.671 kb on + strandat 852.671 kb on + strandat 852.671 kb on + strandat 852.671 kb on + strandat 852.672 kb on - strandat 852.672 kb on - strandat 852.686 kb on + strandat 852.686 kb on + strandat 852.686 kb on + strandat 852.704 kb on + strandat 852.705 kb on - strandat 852.859 kb on - strandat 853.007 kb on + strand, within Pf6N2E2_743at 853.246 kb on - strand, within Pf6N2E2_743at 853.548 kb on - strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 854.227 kb on + strandat 854.228 kb on - strandat 854.549 kb on + strand, within Pf6N2E2_744at 854.549 kb on + strand, within Pf6N2E2_744at 854.550 kb on - strand, within Pf6N2E2_744at 854.550 kb on - strand, within Pf6N2E2_744at 854.550 kb on - strand, within Pf6N2E2_744at 854.681 kb on + strand, within Pf6N2E2_744at 854.681 kb on + strand, within Pf6N2E2_744at 854.682 kb on - strand, within Pf6N2E2_744at 854.682 kb on - strand, within Pf6N2E2_744at 854.682 kb on - strand, within Pf6N2E2_744at 854.689 kb on + strand, within Pf6N2E2_744at 854.718 kb on - strand, within Pf6N2E2_744at 854.983 kb on + strand, within Pf6N2E2_744at 855.031 kb on + strand, within Pf6N2E2_744at 855.031 kb on + strand, within Pf6N2E2_744at 855.032 kb on - strand, within Pf6N2E2_744at 855.032 kb on - strand, within Pf6N2E2_744at 855.124 kb on + strand, within Pf6N2E2_744at 855.125 kb on - strand, within Pf6N2E2_744at 855.125 kb on - strand, within Pf6N2E2_744at 855.125 kb on - strand, within Pf6N2E2_744at 855.125 kb on - strand, within Pf6N2E2_744at 855.161 kb on + strand, within Pf6N2E2_744at 855.162 kb on - strand, within Pf6N2E2_744at 855.162 kb on - strand, within Pf6N2E2_744at 855.162 kb on - strand, within Pf6N2E2_744at 855.162 kb on - strand, within Pf6N2E2_744

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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851,737 + +0.2
851,789 + +0.1
851,790 - +0.7
851,790 - +1.0
851,947 - Pf6N2E2_742 0.20 +0.8
852,002 + Pf6N2E2_742 0.27 +0.8
852,003 - Pf6N2E2_742 0.27 +1.3
852,092 + Pf6N2E2_742 0.38 -0.6
852,092 + Pf6N2E2_742 0.38 -1.3
852,092 + Pf6N2E2_742 0.38 +0.3
852,092 + Pf6N2E2_742 0.38 -0.5
852,093 - Pf6N2E2_742 0.38 +0.4
852,093 - Pf6N2E2_742 0.38 +0.0
852,093 - Pf6N2E2_742 0.38 +0.1
852,284 + Pf6N2E2_742 0.61 -1.0
852,284 + -0.4
852,284 + Pf6N2E2_742 0.61 +1.0
852,285 - Pf6N2E2_742 0.61 +0.8
852,285 - Pf6N2E2_742 0.61 +0.1
852,287 + Pf6N2E2_742 0.61 +2.3
852,287 + Pf6N2E2_742 0.61 +0.9
852,287 + Pf6N2E2_742 0.61 +0.9
852,287 + Pf6N2E2_742 0.61 -1.9
852,287 + Pf6N2E2_742 0.61 -2.1
852,288 - Pf6N2E2_742 0.61 +1.5
852,288 - Pf6N2E2_742 0.61 +1.1
852,288 - Pf6N2E2_742 0.61 -0.3
852,288 - Pf6N2E2_742 0.61 +1.4
852,288 - Pf6N2E2_742 0.61 +0.7
852,288 - Pf6N2E2_742 0.61 -0.7
852,288 - Pf6N2E2_742 0.61 +0.7
852,488 + Pf6N2E2_742 0.85 -1.7
852,488 + Pf6N2E2_742 0.85 -0.9
852,489 - Pf6N2E2_742 0.85 -0.5
852,489 - Pf6N2E2_742 0.85 -0.3
852,599 + +0.9
852,599 + +0.3
852,599 + +0.4
852,599 + -0.3
852,600 - -0.3
852,600 - -0.3
852,671 + -0.5
852,671 + -0.8
852,671 + +0.0
852,671 + +0.2
852,672 - +0.9
852,672 - -0.1
852,686 + -0.8
852,686 + +0.6
852,686 + +0.2
852,704 + -0.2
852,705 - +0.7
852,859 - -0.3
853,007 + Pf6N2E2_743 0.20 -2.3
853,246 - Pf6N2E2_743 0.36 -0.7
853,548 - Pf6N2E2_743 0.57 -0.8
853,566 + Pf6N2E2_743 0.58 +0.1
853,566 + Pf6N2E2_743 0.58 +1.3
853,566 + Pf6N2E2_743 0.58 -1.5
853,566 + Pf6N2E2_743 0.58 -0.1
853,566 + Pf6N2E2_743 0.58 +0.7
853,566 + Pf6N2E2_743 0.58 +0.1
853,567 - Pf6N2E2_743 0.59 +0.2
853,567 - Pf6N2E2_743 0.59 +0.1
853,567 - Pf6N2E2_743 0.59 +0.3
853,567 - Pf6N2E2_743 0.59 +0.2
853,567 - Pf6N2E2_743 0.59 +1.0
853,567 - Pf6N2E2_743 0.59 -0.9
854,227 + -1.2
854,228 - +0.5
854,549 + Pf6N2E2_744 0.13 -0.2
854,549 + Pf6N2E2_744 0.13 -0.5
854,550 - Pf6N2E2_744 0.13 -0.1
854,550 - Pf6N2E2_744 0.13 +0.2
854,550 - Pf6N2E2_744 0.13 +0.2
854,681 + Pf6N2E2_744 0.20 -0.3
854,681 + Pf6N2E2_744 0.20 -0.8
854,682 - Pf6N2E2_744 0.20 +0.4
854,682 - Pf6N2E2_744 0.20 -1.8
854,682 - Pf6N2E2_744 0.20 +0.5
854,689 + Pf6N2E2_744 0.20 +0.1
854,718 - Pf6N2E2_744 0.22 -0.3
854,983 + Pf6N2E2_744 0.36 +0.3
855,031 + Pf6N2E2_744 0.38 +0.5
855,031 + Pf6N2E2_744 0.38 -0.3
855,032 - Pf6N2E2_744 0.38 +1.9
855,032 - Pf6N2E2_744 0.38 +0.4
855,124 + Pf6N2E2_744 0.43 -0.5
855,125 - Pf6N2E2_744 0.43 -2.1
855,125 - Pf6N2E2_744 0.43 -1.7
855,125 - Pf6N2E2_744 0.43 -1.2
855,125 - Pf6N2E2_744 0.43 +0.3
855,161 + Pf6N2E2_744 0.45 +0.4
855,162 - Pf6N2E2_744 0.45 -0.2
855,162 - Pf6N2E2_744 0.45 -0.2
855,162 - Pf6N2E2_744 0.45 +2.1
855,162 - Pf6N2E2_744 0.45 +0.1

Or see this region's nucleotide sequence