Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_695 and Pf6N2E2_696 overlap by 4 nucleotides Pf6N2E2_696 and Pf6N2E2_697 are separated by 40 nucleotides
Pf6N2E2_695 - Nitrite reductase associated c-type cytochorome NirN, at 801,515 to 803,011
_695
Pf6N2E2_696 - Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 803,008 to 803,850
_696
Pf6N2E2_697 - Heme d1 biosynthesis protein NirJ, at 803,891 to 805,069
_697
Position (kb) 803
804 Strain fitness (log2 ratio) -1
0
1 at 802.124 kb on - strand, within Pf6N2E2_695 at 802.224 kb on + strand, within Pf6N2E2_695 at 802.432 kb on - strand, within Pf6N2E2_695 at 802.726 kb on - strand, within Pf6N2E2_695 at 802.917 kb on + strand at 802.917 kb on + strand at 802.917 kb on + strand at 802.917 kb on + strand at 802.918 kb on - strand at 802.918 kb on - strand at 802.982 kb on + strand at 802.982 kb on + strand at 802.983 kb on - strand at 802.985 kb on + strand at 802.985 kb on + strand at 802.985 kb on + strand at 802.986 kb on - strand at 802.986 kb on - strand at 802.986 kb on - strand at 803.232 kb on + strand, within Pf6N2E2_696 at 803.232 kb on + strand, within Pf6N2E2_696 at 803.297 kb on + strand, within Pf6N2E2_696 at 803.297 kb on + strand, within Pf6N2E2_696 at 803.297 kb on + strand, within Pf6N2E2_696 at 803.297 kb on + strand, within Pf6N2E2_696 at 803.429 kb on + strand, within Pf6N2E2_696 at 803.429 kb on + strand, within Pf6N2E2_696 at 803.430 kb on - strand, within Pf6N2E2_696 at 803.430 kb on - strand, within Pf6N2E2_696 at 803.499 kb on - strand, within Pf6N2E2_696 at 803.646 kb on - strand, within Pf6N2E2_696 at 803.705 kb on + strand, within Pf6N2E2_696 at 803.706 kb on - strand, within Pf6N2E2_696 at 803.706 kb on - strand, within Pf6N2E2_696 at 803.706 kb on - strand, within Pf6N2E2_696 at 804.165 kb on + strand, within Pf6N2E2_697 at 804.165 kb on + strand, within Pf6N2E2_697 at 804.165 kb on + strand, within Pf6N2E2_697 at 804.165 kb on + strand, within Pf6N2E2_697 at 804.191 kb on - strand, within Pf6N2E2_697 at 804.456 kb on + strand, within Pf6N2E2_697 at 804.456 kb on + strand, within Pf6N2E2_697 at 804.456 kb on + strand, within Pf6N2E2_697 at 804.457 kb on - strand, within Pf6N2E2_697 at 804.457 kb on - strand, within Pf6N2E2_697 at 804.457 kb on - strand, within Pf6N2E2_697 at 804.457 kb on - strand, within Pf6N2E2_697 at 804.486 kb on - strand, within Pf6N2E2_697 at 804.493 kb on - strand, within Pf6N2E2_697 at 804.681 kb on + strand, within Pf6N2E2_697 at 804.682 kb on - strand, within Pf6N2E2_697 at 804.682 kb on - strand, within Pf6N2E2_697 at 804.777 kb on + strand, within Pf6N2E2_697
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 802,124 - Pf6N2E2_695 0.41 +1.6 802,224 + Pf6N2E2_695 0.47 +0.1 802,432 - Pf6N2E2_695 0.61 +0.6 802,726 - Pf6N2E2_695 0.81 -0.5 802,917 + +0.2 802,917 + -0.8 802,917 + +0.5 802,917 + +1.0 802,918 - +0.9 802,918 - -0.6 802,982 + -0.4 802,982 + -0.4 802,983 - -0.9 802,985 + +0.7 802,985 + +0.8 802,985 + -0.5 802,986 - +0.6 802,986 - +0.2 802,986 - -0.1 803,232 + Pf6N2E2_696 0.27 -0.1 803,232 + Pf6N2E2_696 0.27 +0.1 803,297 + Pf6N2E2_696 0.34 -0.1 803,297 + Pf6N2E2_696 0.34 +1.3 803,297 + Pf6N2E2_696 0.34 -1.1 803,297 + Pf6N2E2_696 0.34 +0.2 803,429 + Pf6N2E2_696 0.50 -0.0 803,429 + Pf6N2E2_696 0.50 -1.0 803,430 - Pf6N2E2_696 0.50 +0.2 803,430 - Pf6N2E2_696 0.50 -0.3 803,499 - Pf6N2E2_696 0.58 -0.5 803,646 - Pf6N2E2_696 0.76 +0.7 803,705 + Pf6N2E2_696 0.83 +0.2 803,706 - Pf6N2E2_696 0.83 -0.4 803,706 - Pf6N2E2_696 0.83 -0.7 803,706 - Pf6N2E2_696 0.83 -0.2 804,165 + Pf6N2E2_697 0.23 +0.1 804,165 + Pf6N2E2_697 0.23 +0.0 804,165 + Pf6N2E2_697 0.23 +0.7 804,165 + Pf6N2E2_697 0.23 -1.3 804,191 - Pf6N2E2_697 0.25 +0.6 804,456 + Pf6N2E2_697 0.48 +0.5 804,456 + Pf6N2E2_697 0.48 +1.4 804,456 + Pf6N2E2_697 0.48 +0.8 804,457 - Pf6N2E2_697 0.48 +0.4 804,457 - Pf6N2E2_697 0.48 +0.4 804,457 - Pf6N2E2_697 0.48 +0.1 804,457 - Pf6N2E2_697 0.48 +0.9 804,486 - Pf6N2E2_697 0.50 -0.1 804,493 - Pf6N2E2_697 0.51 +0.8 804,681 + Pf6N2E2_697 0.67 +0.2 804,682 - Pf6N2E2_697 0.67 -0.6 804,682 - Pf6N2E2_697 0.67 +0.9 804,777 + Pf6N2E2_697 0.75 -0.8
Or see this region's nucleotide sequence