Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5524 and Pf6N2E2_5525 are separated by 888 nucleotides Pf6N2E2_5525 and Pf6N2E2_5526 are separated by 3 nucleotides Pf6N2E2_5526 and Pf6N2E2_5527 are separated by 78 nucleotides
Pf6N2E2_5524 - Outer membrane porin, OprD family, at 6,343,630 to 6,344,883
_5524
Pf6N2E2_5525 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 6,345,772 to 6,346,197
_5525
Pf6N2E2_5526 - Protein SlyX, at 6,346,201 to 6,346,407
_5526
Pf6N2E2_5527 - Cold shock protein CspC, at 6,346,486 to 6,347,091
_5527
Position (kb)
6345
6346
6347 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6344.788 kb on - strand at 6344.915 kb on - strand at 6344.976 kb on - strand at 6344.976 kb on - strand at 6344.976 kb on - strand at 6344.976 kb on - strand at 6344.977 kb on + strand at 6344.978 kb on - strand at 6344.978 kb on - strand at 6344.978 kb on - strand at 6345.100 kb on + strand at 6345.101 kb on - strand at 6345.101 kb on - strand at 6345.101 kb on - strand at 6345.101 kb on - strand at 6345.101 kb on - strand at 6345.101 kb on - strand at 6345.101 kb on - strand at 6345.101 kb on - strand at 6345.101 kb on - strand at 6345.131 kb on + strand at 6345.132 kb on - strand at 6345.132 kb on - strand at 6345.132 kb on - strand at 6345.132 kb on - strand at 6345.132 kb on - strand at 6345.191 kb on + strand at 6345.191 kb on + strand at 6345.192 kb on - strand at 6345.429 kb on + strand at 6345.469 kb on + strand at 6345.522 kb on + strand at 6345.523 kb on - strand at 6345.523 kb on - strand at 6345.663 kb on + strand at 6345.663 kb on + strand at 6345.724 kb on + strand at 6345.725 kb on - strand at 6345.725 kb on - strand at 6345.725 kb on - strand at 6345.764 kb on + strand at 6345.765 kb on - strand at 6345.765 kb on - strand at 6345.782 kb on + strand at 6345.862 kb on + strand, within Pf6N2E2_5525 at 6345.863 kb on - strand, within Pf6N2E2_5525 at 6345.897 kb on + strand, within Pf6N2E2_5525 at 6345.898 kb on - strand, within Pf6N2E2_5525 at 6346.059 kb on + strand, within Pf6N2E2_5525 at 6346.060 kb on - strand, within Pf6N2E2_5525 at 6346.117 kb on + strand, within Pf6N2E2_5525 at 6346.117 kb on + strand, within Pf6N2E2_5525 at 6346.117 kb on + strand, within Pf6N2E2_5525 at 6346.117 kb on + strand, within Pf6N2E2_5525 at 6346.117 kb on + strand, within Pf6N2E2_5525 at 6346.117 kb on + strand, within Pf6N2E2_5525 at 6346.118 kb on - strand, within Pf6N2E2_5525 at 6346.118 kb on - strand, within Pf6N2E2_5525 at 6346.118 kb on - strand, within Pf6N2E2_5525 at 6346.118 kb on - strand, within Pf6N2E2_5525 at 6346.118 kb on - strand, within Pf6N2E2_5525 at 6346.119 kb on + strand, within Pf6N2E2_5525 at 6346.119 kb on + strand, within Pf6N2E2_5525 at 6346.119 kb on + strand, within Pf6N2E2_5525 at 6346.119 kb on + strand, within Pf6N2E2_5525 at 6346.119 kb on + strand, within Pf6N2E2_5525 at 6346.119 kb on + strand, within Pf6N2E2_5525 at 6346.119 kb on + strand, within Pf6N2E2_5525 at 6346.119 kb on + strand, within Pf6N2E2_5525 at 6346.119 kb on + strand, within Pf6N2E2_5525 at 6346.119 kb on + strand, within Pf6N2E2_5525 at 6346.119 kb on + strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.120 kb on - strand, within Pf6N2E2_5525 at 6346.402 kb on + strand at 6346.402 kb on + strand at 6346.402 kb on + strand at 6346.403 kb on - strand at 6346.436 kb on + strand at 6346.436 kb on + strand at 6346.669 kb on - strand, within Pf6N2E2_5527 at 6346.713 kb on - strand, within Pf6N2E2_5527 at 6346.982 kb on + strand, within Pf6N2E2_5527 at 6347.006 kb on + strand, within Pf6N2E2_5527 at 6347.178 kb on + strand at 6347.193 kb on - strand at 6347.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 6,344,788 - -2.4 6,344,915 - -0.2 6,344,976 - -0.5 6,344,976 - -0.6 6,344,976 - +0.5 6,344,976 - +0.5 6,344,977 + -2.8 6,344,978 - +1.2 6,344,978 - +1.2 6,344,978 - -3.0 6,345,100 + -2.2 6,345,101 - +3.0 6,345,101 - +2.6 6,345,101 - +2.3 6,345,101 - +2.2 6,345,101 - +3.1 6,345,101 - +0.5 6,345,101 - +2.9 6,345,101 - +1.7 6,345,101 - +1.0 6,345,131 + -2.6 6,345,132 - +2.3 6,345,132 - +2.6 6,345,132 - +2.9 6,345,132 - +2.3 6,345,132 - +1.5 6,345,191 + -2.5 6,345,191 + -1.7 6,345,192 - +2.4 6,345,429 + -3.5 6,345,469 + -1.7 6,345,522 + -2.7 6,345,523 - +2.3 6,345,523 - +2.4 6,345,663 + -2.4 6,345,663 + -1.9 6,345,724 + -0.1 6,345,725 - +2.0 6,345,725 - +2.3 6,345,725 - +2.4 6,345,764 + -0.8 6,345,765 - +0.7 6,345,765 - -0.4 6,345,782 + -2.4 6,345,862 + Pf6N2E2_5525 0.21 -2.0 6,345,863 - Pf6N2E2_5525 0.21 +1.0 6,345,897 + Pf6N2E2_5525 0.29 -0.9 6,345,898 - Pf6N2E2_5525 0.30 -0.3 6,346,059 + Pf6N2E2_5525 0.67 -2.4 6,346,060 - Pf6N2E2_5525 0.68 -0.0 6,346,117 + Pf6N2E2_5525 0.81 -1.1 6,346,117 + Pf6N2E2_5525 0.81 -1.2 6,346,117 + Pf6N2E2_5525 0.81 -2.8 6,346,117 + Pf6N2E2_5525 0.81 -1.1 6,346,117 + Pf6N2E2_5525 0.81 -1.2 6,346,117 + Pf6N2E2_5525 0.81 -2.7 6,346,118 - Pf6N2E2_5525 0.81 -0.1 6,346,118 - Pf6N2E2_5525 0.81 +0.3 6,346,118 - Pf6N2E2_5525 0.81 +0.3 6,346,118 - Pf6N2E2_5525 0.81 -1.7 6,346,118 - Pf6N2E2_5525 0.81 -1.3 6,346,119 + Pf6N2E2_5525 0.81 -3.2 6,346,119 + Pf6N2E2_5525 0.81 -2.3 6,346,119 + Pf6N2E2_5525 0.81 -2.4 6,346,119 + Pf6N2E2_5525 0.81 -1.7 6,346,119 + Pf6N2E2_5525 0.81 -2.1 6,346,119 + Pf6N2E2_5525 0.81 -1.8 6,346,119 + Pf6N2E2_5525 0.81 -1.4 6,346,119 + Pf6N2E2_5525 0.81 -3.0 6,346,119 + Pf6N2E2_5525 0.81 -2.4 6,346,119 + Pf6N2E2_5525 0.81 -2.5 6,346,119 + Pf6N2E2_5525 0.81 -3.2 6,346,120 - Pf6N2E2_5525 0.82 -0.4 6,346,120 - Pf6N2E2_5525 0.82 -1.2 6,346,120 - Pf6N2E2_5525 0.82 +0.7 6,346,120 - Pf6N2E2_5525 0.82 -2.0 6,346,120 - Pf6N2E2_5525 0.82 -0.8 6,346,120 - Pf6N2E2_5525 0.82 -0.7 6,346,120 - Pf6N2E2_5525 0.82 +0.2 6,346,120 - Pf6N2E2_5525 0.82 -1.7 6,346,120 - Pf6N2E2_5525 0.82 -1.3 6,346,120 - Pf6N2E2_5525 0.82 -0.1 6,346,120 - Pf6N2E2_5525 0.82 -1.3 6,346,120 - Pf6N2E2_5525 0.82 +0.0 6,346,120 - Pf6N2E2_5525 0.82 +1.3 6,346,120 - Pf6N2E2_5525 0.82 +1.1 6,346,402 + -1.2 6,346,402 + -1.9 6,346,402 + -1.5 6,346,403 - -0.8 6,346,436 + -3.5 6,346,436 + -1.9 6,346,669 - Pf6N2E2_5527 0.30 -1.1 6,346,713 - Pf6N2E2_5527 0.37 -1.4 6,346,982 + Pf6N2E2_5527 0.82 -0.6 6,347,006 + Pf6N2E2_5527 0.86 -1.3 6,347,178 + -0.5 6,347,193 - -2.7 6,347,193 - -2.2
Or see this region's nucleotide sequence