Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5448

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5446 and Pf6N2E2_5447 overlap by 4 nucleotidesPf6N2E2_5447 and Pf6N2E2_5448 are separated by 428 nucleotidesPf6N2E2_5448 and Pf6N2E2_5449 are separated by 127 nucleotides Pf6N2E2_5446 - iron-chelator utilization protein, at 6,253,430 to 6,254,215 _5446 Pf6N2E2_5447 - Transcriptional regulator, PadR family, at 6,254,212 to 6,254,775 _5447 Pf6N2E2_5448 - hypothetical protein, at 6,255,204 to 6,255,698 _5448 Pf6N2E2_5449 - CFA/I fimbrial subunit C precursor, at 6,255,826 to 6,258,348 _5449 Position (kb) 6255 6256Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 6254.354 kb on + strand, within Pf6N2E2_5447at 6254.354 kb on + strand, within Pf6N2E2_5447at 6254.354 kb on + strand, within Pf6N2E2_5447at 6254.354 kb on + strand, within Pf6N2E2_5447at 6254.354 kb on + strand, within Pf6N2E2_5447at 6254.354 kb on + strand, within Pf6N2E2_5447at 6254.355 kb on - strand, within Pf6N2E2_5447at 6254.355 kb on - strand, within Pf6N2E2_5447at 6254.355 kb on - strand, within Pf6N2E2_5447at 6254.355 kb on - strand, within Pf6N2E2_5447at 6254.489 kb on + strand, within Pf6N2E2_5447at 6254.558 kb on + strand, within Pf6N2E2_5447at 6254.558 kb on + strand, within Pf6N2E2_5447at 6254.559 kb on - strand, within Pf6N2E2_5447at 6254.559 kb on - strand, within Pf6N2E2_5447at 6254.559 kb on - strand, within Pf6N2E2_5447at 6254.583 kb on - strand, within Pf6N2E2_5447at 6254.583 kb on - strand, within Pf6N2E2_5447at 6254.598 kb on + strand, within Pf6N2E2_5447at 6254.598 kb on + strand, within Pf6N2E2_5447at 6254.599 kb on - strand, within Pf6N2E2_5447at 6254.624 kb on + strand, within Pf6N2E2_5447at 6254.624 kb on + strand, within Pf6N2E2_5447at 6254.624 kb on + strand, within Pf6N2E2_5447at 6254.625 kb on - strand, within Pf6N2E2_5447at 6254.625 kb on - strand, within Pf6N2E2_5447at 6254.762 kb on + strandat 6254.762 kb on + strandat 6254.763 kb on - strandat 6254.763 kb on - strandat 6254.775 kb on + strandat 6254.814 kb on - strandat 6254.815 kb on + strandat 6254.833 kb on + strandat 6254.918 kb on + strandat 6254.957 kb on + strandat 6255.048 kb on + strandat 6255.048 kb on + strandat 6255.048 kb on + strandat 6255.050 kb on + strandat 6255.062 kb on - strandat 6255.064 kb on + strandat 6255.064 kb on + strandat 6255.073 kb on - strandat 6255.090 kb on + strandat 6255.179 kb on + strandat 6255.180 kb on - strandat 6255.300 kb on - strand, within Pf6N2E2_5448at 6255.300 kb on - strand, within Pf6N2E2_5448at 6255.300 kb on - strand, within Pf6N2E2_5448at 6255.318 kb on - strand, within Pf6N2E2_5448at 6255.318 kb on - strand, within Pf6N2E2_5448at 6255.334 kb on + strand, within Pf6N2E2_5448at 6255.335 kb on - strand, within Pf6N2E2_5448at 6255.335 kb on - strand, within Pf6N2E2_5448at 6255.345 kb on - strand, within Pf6N2E2_5448at 6255.378 kb on + strand, within Pf6N2E2_5448at 6255.378 kb on + strand, within Pf6N2E2_5448at 6255.378 kb on + strand, within Pf6N2E2_5448at 6255.379 kb on - strand, within Pf6N2E2_5448at 6255.420 kb on + strand, within Pf6N2E2_5448at 6255.420 kb on + strand, within Pf6N2E2_5448at 6255.420 kb on + strand, within Pf6N2E2_5448at 6255.420 kb on + strand, within Pf6N2E2_5448at 6255.421 kb on - strand, within Pf6N2E2_5448at 6255.421 kb on - strand, within Pf6N2E2_5448at 6255.421 kb on - strand, within Pf6N2E2_5448at 6255.421 kb on - strand, within Pf6N2E2_5448at 6255.456 kb on + strand, within Pf6N2E2_5448at 6255.456 kb on + strand, within Pf6N2E2_5448at 6255.457 kb on - strand, within Pf6N2E2_5448at 6255.457 kb on - strand, within Pf6N2E2_5448at 6255.457 kb on - strand, within Pf6N2E2_5448at 6255.457 kb on - strand, within Pf6N2E2_5448at 6255.457 kb on - strand, within Pf6N2E2_5448at 6255.457 kb on - strand, within Pf6N2E2_5448at 6255.457 kb on - strand, within Pf6N2E2_5448at 6255.457 kb on - strand, within Pf6N2E2_5448at 6255.457 kb on - strand, within Pf6N2E2_5448at 6255.457 kb on - strand, within Pf6N2E2_5448at 6255.623 kb on + strand, within Pf6N2E2_5448at 6255.646 kb on - strand, within Pf6N2E2_5448at 6255.811 kb on + strandat 6255.812 kb on - strandat 6255.863 kb on + strandat 6255.906 kb on + strandat 6255.907 kb on - strandat 6255.996 kb on - strandat 6256.012 kb on + strandat 6256.012 kb on + strandat 6256.012 kb on + strandat 6256.012 kb on + strandat 6256.013 kb on - strandat 6256.013 kb on - strandat 6256.013 kb on - strandat 6256.013 kb on - strandat 6256.056 kb on + strandat 6256.056 kb on + strandat 6256.057 kb on - strandat 6256.057 kb on - strandat 6256.057 kb on - strandat 6256.057 kb on - strandat 6256.195 kb on + strand, within Pf6N2E2_5449at 6256.195 kb on + strand, within Pf6N2E2_5449at 6256.440 kb on + strand, within Pf6N2E2_5449at 6256.441 kb on - strand, within Pf6N2E2_5449at 6256.447 kb on + strand, within Pf6N2E2_5449at 6256.448 kb on - strand, within Pf6N2E2_5449at 6256.511 kb on - strand, within Pf6N2E2_5449at 6256.591 kb on + strand, within Pf6N2E2_5449at 6256.591 kb on + strand, within Pf6N2E2_5449at 6256.591 kb on + strand, within Pf6N2E2_5449at 6256.592 kb on - strand, within Pf6N2E2_5449at 6256.592 kb on - strand, within Pf6N2E2_5449at 6256.592 kb on - strand, within Pf6N2E2_5449at 6256.592 kb on - strand, within Pf6N2E2_5449at 6256.649 kb on - strand, within Pf6N2E2_5449at 6256.649 kb on - strand, within Pf6N2E2_5449at 6256.682 kb on + strand, within Pf6N2E2_5449at 6256.682 kb on + strand, within Pf6N2E2_5449at 6256.682 kb on + strand, within Pf6N2E2_5449at 6256.682 kb on + strand, within Pf6N2E2_5449at 6256.683 kb on - strand, within Pf6N2E2_5449at 6256.683 kb on - strand, within Pf6N2E2_5449at 6256.683 kb on - strand, within Pf6N2E2_5449at 6256.684 kb on + strand, within Pf6N2E2_5449at 6256.684 kb on + strand, within Pf6N2E2_5449at 6256.684 kb on + strand, within Pf6N2E2_5449at 6256.684 kb on + strand, within Pf6N2E2_5449at 6256.684 kb on + strand, within Pf6N2E2_5449at 6256.684 kb on + strand, within Pf6N2E2_5449at 6256.684 kb on + strand, within Pf6N2E2_5449at 6256.685 kb on - strand, within Pf6N2E2_5449

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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6,254,354 + Pf6N2E2_5447 0.25 +2.3
6,254,354 + Pf6N2E2_5447 0.25 -0.1
6,254,354 + Pf6N2E2_5447 0.25 +0.3
6,254,354 + Pf6N2E2_5447 0.25 +0.2
6,254,354 + Pf6N2E2_5447 0.25 +0.5
6,254,354 + Pf6N2E2_5447 0.25 +0.6
6,254,355 - Pf6N2E2_5447 0.25 -1.8
6,254,355 - Pf6N2E2_5447 0.25 +0.2
6,254,355 - Pf6N2E2_5447 0.25 +0.0
6,254,355 - Pf6N2E2_5447 0.25 +0.5
6,254,489 + Pf6N2E2_5447 0.49 -0.4
6,254,558 + Pf6N2E2_5447 0.61 -2.3
6,254,558 + Pf6N2E2_5447 0.61 -0.3
6,254,559 - Pf6N2E2_5447 0.62 -0.4
6,254,559 - Pf6N2E2_5447 0.62 -0.2
6,254,559 - Pf6N2E2_5447 0.62 +0.1
6,254,583 - Pf6N2E2_5447 0.66 +0.9
6,254,583 - Pf6N2E2_5447 0.66 +0.3
6,254,598 + Pf6N2E2_5447 0.68 -0.6
6,254,598 + Pf6N2E2_5447 0.68 -0.3
6,254,599 - Pf6N2E2_5447 0.69 -1.2
6,254,624 + Pf6N2E2_5447 0.73 +0.9
6,254,624 + Pf6N2E2_5447 0.73 +0.5
6,254,624 + Pf6N2E2_5447 0.73 -2.0
6,254,625 - Pf6N2E2_5447 0.73 +0.8
6,254,625 - Pf6N2E2_5447 0.73 -0.3
6,254,762 + -1.0
6,254,762 + +0.8
6,254,763 - +0.2
6,254,763 - +0.8
6,254,775 + -0.4
6,254,814 - +4.9
6,254,815 + -1.2
6,254,833 + -0.0
6,254,918 + +1.4
6,254,957 + -1.4
6,255,048 + -0.0
6,255,048 + -1.6
6,255,048 + -0.9
6,255,050 + -0.6
6,255,062 - +5.1
6,255,064 + -0.6
6,255,064 + +1.6
6,255,073 - +4.7
6,255,090 + -0.6
6,255,179 + -0.9
6,255,180 - +3.8
6,255,300 - Pf6N2E2_5448 0.19 +3.1
6,255,300 - Pf6N2E2_5448 0.19 +3.6
6,255,300 - Pf6N2E2_5448 0.19 +3.4
6,255,318 - Pf6N2E2_5448 0.23 +3.9
6,255,318 - Pf6N2E2_5448 0.23 +3.8
6,255,334 + Pf6N2E2_5448 0.26 -1.3
6,255,335 - Pf6N2E2_5448 0.26 +2.3
6,255,335 - Pf6N2E2_5448 0.26 +4.1
6,255,345 - Pf6N2E2_5448 0.28 +2.5
6,255,378 + Pf6N2E2_5448 0.35 -0.1
6,255,378 + Pf6N2E2_5448 0.35 -1.2
6,255,378 + Pf6N2E2_5448 0.35 -0.0
6,255,379 - Pf6N2E2_5448 0.35 +2.1
6,255,420 + Pf6N2E2_5448 0.44 -0.8
6,255,420 + Pf6N2E2_5448 0.44 +0.1
6,255,420 + Pf6N2E2_5448 0.44 +1.4
6,255,420 + Pf6N2E2_5448 0.44 +0.2
6,255,421 - Pf6N2E2_5448 0.44 +0.5
6,255,421 - Pf6N2E2_5448 0.44 +2.8
6,255,421 - Pf6N2E2_5448 0.44 +3.4
6,255,421 - Pf6N2E2_5448 0.44 +2.7
6,255,456 + Pf6N2E2_5448 0.51 +0.3
6,255,456 + Pf6N2E2_5448 0.51 -0.0
6,255,457 - Pf6N2E2_5448 0.51 +3.9
6,255,457 - Pf6N2E2_5448 0.51 +3.1
6,255,457 - Pf6N2E2_5448 0.51 +1.7
6,255,457 - Pf6N2E2_5448 0.51 +3.8
6,255,457 - Pf6N2E2_5448 0.51 +2.8
6,255,457 - Pf6N2E2_5448 0.51 +3.6
6,255,457 - Pf6N2E2_5448 0.51 +4.1
6,255,457 - Pf6N2E2_5448 0.51 +3.2
6,255,457 - Pf6N2E2_5448 0.51 +2.2
6,255,457 - Pf6N2E2_5448 0.51 +3.0
6,255,623 + Pf6N2E2_5448 0.85 +0.6
6,255,646 - Pf6N2E2_5448 0.89 +3.0
6,255,811 + -1.4
6,255,812 - +3.0
6,255,863 + -0.4
6,255,906 + -0.5
6,255,907 - +0.7
6,255,996 - +0.6
6,256,012 + +0.8
6,256,012 + +0.2
6,256,012 + +1.0
6,256,012 + -0.0
6,256,013 - +0.0
6,256,013 - +0.4
6,256,013 - +0.1
6,256,013 - -0.3
6,256,056 + -0.0
6,256,056 + -0.3
6,256,057 - +0.3
6,256,057 - +0.4
6,256,057 - +0.2
6,256,057 - +1.1
6,256,195 + Pf6N2E2_5449 0.15 +0.5
6,256,195 + Pf6N2E2_5449 0.15 +0.2
6,256,440 + Pf6N2E2_5449 0.24 -1.5
6,256,441 - Pf6N2E2_5449 0.24 -0.5
6,256,447 + Pf6N2E2_5449 0.25 -0.2
6,256,448 - Pf6N2E2_5449 0.25 +1.1
6,256,511 - Pf6N2E2_5449 0.27 -0.0
6,256,591 + Pf6N2E2_5449 0.30 -1.1
6,256,591 + Pf6N2E2_5449 0.30 -0.2
6,256,591 + Pf6N2E2_5449 0.30 -1.9
6,256,592 - Pf6N2E2_5449 0.30 +1.0
6,256,592 - Pf6N2E2_5449 0.30 -1.3
6,256,592 - Pf6N2E2_5449 0.30 -0.4
6,256,592 - Pf6N2E2_5449 0.30 -0.3
6,256,649 - Pf6N2E2_5449 0.33 +0.5
6,256,649 - Pf6N2E2_5449 0.33 -0.6
6,256,682 + Pf6N2E2_5449 0.34 +0.4
6,256,682 + Pf6N2E2_5449 0.34 +0.8
6,256,682 + Pf6N2E2_5449 0.34 +0.2
6,256,682 + Pf6N2E2_5449 0.34 -1.2
6,256,683 - Pf6N2E2_5449 0.34 -0.5
6,256,683 - Pf6N2E2_5449 0.34 -0.4
6,256,683 - Pf6N2E2_5449 0.34 +1.9
6,256,684 + Pf6N2E2_5449 0.34 +0.2
6,256,684 + Pf6N2E2_5449 0.34 -0.4
6,256,684 + Pf6N2E2_5449 0.34 -1.3
6,256,684 + Pf6N2E2_5449 0.34 +0.4
6,256,684 + Pf6N2E2_5449 0.34 -0.3
6,256,684 + Pf6N2E2_5449 0.34 +0.3
6,256,684 + Pf6N2E2_5449 0.34 +1.4
6,256,685 - Pf6N2E2_5449 0.34 +1.3

Or see this region's nucleotide sequence