Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5446 and Pf6N2E2_5447 overlap by 4 nucleotides Pf6N2E2_5447 and Pf6N2E2_5448 are separated by 428 nucleotides Pf6N2E2_5448 and Pf6N2E2_5449 are separated by 127 nucleotides
Pf6N2E2_5446 - iron-chelator utilization protein, at 6,253,430 to 6,254,215
_5446
Pf6N2E2_5447 - Transcriptional regulator, PadR family, at 6,254,212 to 6,254,775
_5447
Pf6N2E2_5448 - hypothetical protein, at 6,255,204 to 6,255,698
_5448
Pf6N2E2_5449 - CFA/I fimbrial subunit C precursor, at 6,255,826 to 6,258,348
_5449
Position (kb)
6255
6256 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 6254.354 kb on + strand, within Pf6N2E2_5447 at 6254.354 kb on + strand, within Pf6N2E2_5447 at 6254.354 kb on + strand, within Pf6N2E2_5447 at 6254.354 kb on + strand, within Pf6N2E2_5447 at 6254.354 kb on + strand, within Pf6N2E2_5447 at 6254.354 kb on + strand, within Pf6N2E2_5447 at 6254.355 kb on - strand, within Pf6N2E2_5447 at 6254.355 kb on - strand, within Pf6N2E2_5447 at 6254.355 kb on - strand, within Pf6N2E2_5447 at 6254.355 kb on - strand, within Pf6N2E2_5447 at 6254.489 kb on + strand, within Pf6N2E2_5447 at 6254.558 kb on + strand, within Pf6N2E2_5447 at 6254.558 kb on + strand, within Pf6N2E2_5447 at 6254.559 kb on - strand, within Pf6N2E2_5447 at 6254.559 kb on - strand, within Pf6N2E2_5447 at 6254.559 kb on - strand, within Pf6N2E2_5447 at 6254.583 kb on - strand, within Pf6N2E2_5447 at 6254.583 kb on - strand, within Pf6N2E2_5447 at 6254.598 kb on + strand, within Pf6N2E2_5447 at 6254.598 kb on + strand, within Pf6N2E2_5447 at 6254.599 kb on - strand, within Pf6N2E2_5447 at 6254.624 kb on + strand, within Pf6N2E2_5447 at 6254.624 kb on + strand, within Pf6N2E2_5447 at 6254.624 kb on + strand, within Pf6N2E2_5447 at 6254.625 kb on - strand, within Pf6N2E2_5447 at 6254.625 kb on - strand, within Pf6N2E2_5447 at 6254.762 kb on + strand at 6254.762 kb on + strand at 6254.763 kb on - strand at 6254.763 kb on - strand at 6254.775 kb on + strand at 6254.814 kb on - strand at 6254.815 kb on + strand at 6254.833 kb on + strand at 6254.918 kb on + strand at 6254.957 kb on + strand at 6255.048 kb on + strand at 6255.048 kb on + strand at 6255.048 kb on + strand at 6255.050 kb on + strand at 6255.062 kb on - strand at 6255.064 kb on + strand at 6255.064 kb on + strand at 6255.073 kb on - strand at 6255.090 kb on + strand at 6255.179 kb on + strand at 6255.180 kb on - strand at 6255.300 kb on - strand, within Pf6N2E2_5448 at 6255.300 kb on - strand, within Pf6N2E2_5448 at 6255.300 kb on - strand, within Pf6N2E2_5448 at 6255.318 kb on - strand, within Pf6N2E2_5448 at 6255.318 kb on - strand, within Pf6N2E2_5448 at 6255.334 kb on + strand, within Pf6N2E2_5448 at 6255.335 kb on - strand, within Pf6N2E2_5448 at 6255.335 kb on - strand, within Pf6N2E2_5448 at 6255.345 kb on - strand, within Pf6N2E2_5448 at 6255.378 kb on + strand, within Pf6N2E2_5448 at 6255.378 kb on + strand, within Pf6N2E2_5448 at 6255.378 kb on + strand, within Pf6N2E2_5448 at 6255.379 kb on - strand, within Pf6N2E2_5448 at 6255.420 kb on + strand, within Pf6N2E2_5448 at 6255.420 kb on + strand, within Pf6N2E2_5448 at 6255.420 kb on + strand, within Pf6N2E2_5448 at 6255.420 kb on + strand, within Pf6N2E2_5448 at 6255.421 kb on - strand, within Pf6N2E2_5448 at 6255.421 kb on - strand, within Pf6N2E2_5448 at 6255.421 kb on - strand, within Pf6N2E2_5448 at 6255.421 kb on - strand, within Pf6N2E2_5448 at 6255.456 kb on + strand, within Pf6N2E2_5448 at 6255.456 kb on + strand, within Pf6N2E2_5448 at 6255.457 kb on - strand, within Pf6N2E2_5448 at 6255.457 kb on - strand, within Pf6N2E2_5448 at 6255.457 kb on - strand, within Pf6N2E2_5448 at 6255.457 kb on - strand, within Pf6N2E2_5448 at 6255.457 kb on - strand, within Pf6N2E2_5448 at 6255.457 kb on - strand, within Pf6N2E2_5448 at 6255.457 kb on - strand, within Pf6N2E2_5448 at 6255.457 kb on - strand, within Pf6N2E2_5448 at 6255.457 kb on - strand, within Pf6N2E2_5448 at 6255.457 kb on - strand, within Pf6N2E2_5448 at 6255.623 kb on + strand, within Pf6N2E2_5448 at 6255.646 kb on - strand, within Pf6N2E2_5448 at 6255.811 kb on + strand at 6255.812 kb on - strand at 6255.863 kb on + strand at 6255.906 kb on + strand at 6255.907 kb on - strand at 6255.996 kb on - strand at 6256.012 kb on + strand at 6256.012 kb on + strand at 6256.012 kb on + strand at 6256.012 kb on + strand at 6256.013 kb on - strand at 6256.013 kb on - strand at 6256.013 kb on - strand at 6256.013 kb on - strand at 6256.056 kb on + strand at 6256.056 kb on + strand at 6256.057 kb on - strand at 6256.057 kb on - strand at 6256.057 kb on - strand at 6256.057 kb on - strand at 6256.195 kb on + strand, within Pf6N2E2_5449 at 6256.195 kb on + strand, within Pf6N2E2_5449 at 6256.440 kb on + strand, within Pf6N2E2_5449 at 6256.441 kb on - strand, within Pf6N2E2_5449 at 6256.447 kb on + strand, within Pf6N2E2_5449 at 6256.448 kb on - strand, within Pf6N2E2_5449 at 6256.511 kb on - strand, within Pf6N2E2_5449 at 6256.591 kb on + strand, within Pf6N2E2_5449 at 6256.591 kb on + strand, within Pf6N2E2_5449 at 6256.591 kb on + strand, within Pf6N2E2_5449 at 6256.592 kb on - strand, within Pf6N2E2_5449 at 6256.592 kb on - strand, within Pf6N2E2_5449 at 6256.592 kb on - strand, within Pf6N2E2_5449 at 6256.592 kb on - strand, within Pf6N2E2_5449 at 6256.649 kb on - strand, within Pf6N2E2_5449 at 6256.649 kb on - strand, within Pf6N2E2_5449 at 6256.682 kb on + strand, within Pf6N2E2_5449 at 6256.682 kb on + strand, within Pf6N2E2_5449 at 6256.682 kb on + strand, within Pf6N2E2_5449 at 6256.682 kb on + strand, within Pf6N2E2_5449 at 6256.683 kb on - strand, within Pf6N2E2_5449 at 6256.683 kb on - strand, within Pf6N2E2_5449 at 6256.683 kb on - strand, within Pf6N2E2_5449 at 6256.684 kb on + strand, within Pf6N2E2_5449 at 6256.684 kb on + strand, within Pf6N2E2_5449 at 6256.684 kb on + strand, within Pf6N2E2_5449 at 6256.684 kb on + strand, within Pf6N2E2_5449 at 6256.684 kb on + strand, within Pf6N2E2_5449 at 6256.684 kb on + strand, within Pf6N2E2_5449 at 6256.684 kb on + strand, within Pf6N2E2_5449 at 6256.685 kb on - strand, within Pf6N2E2_5449
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 6,254,354 + Pf6N2E2_5447 0.25 +2.3 6,254,354 + Pf6N2E2_5447 0.25 -0.1 6,254,354 + Pf6N2E2_5447 0.25 +0.3 6,254,354 + Pf6N2E2_5447 0.25 +0.2 6,254,354 + Pf6N2E2_5447 0.25 +0.5 6,254,354 + Pf6N2E2_5447 0.25 +0.6 6,254,355 - Pf6N2E2_5447 0.25 -1.8 6,254,355 - Pf6N2E2_5447 0.25 +0.2 6,254,355 - Pf6N2E2_5447 0.25 +0.0 6,254,355 - Pf6N2E2_5447 0.25 +0.5 6,254,489 + Pf6N2E2_5447 0.49 -0.4 6,254,558 + Pf6N2E2_5447 0.61 -2.3 6,254,558 + Pf6N2E2_5447 0.61 -0.3 6,254,559 - Pf6N2E2_5447 0.62 -0.4 6,254,559 - Pf6N2E2_5447 0.62 -0.2 6,254,559 - Pf6N2E2_5447 0.62 +0.1 6,254,583 - Pf6N2E2_5447 0.66 +0.9 6,254,583 - Pf6N2E2_5447 0.66 +0.3 6,254,598 + Pf6N2E2_5447 0.68 -0.6 6,254,598 + Pf6N2E2_5447 0.68 -0.3 6,254,599 - Pf6N2E2_5447 0.69 -1.2 6,254,624 + Pf6N2E2_5447 0.73 +0.9 6,254,624 + Pf6N2E2_5447 0.73 +0.5 6,254,624 + Pf6N2E2_5447 0.73 -2.0 6,254,625 - Pf6N2E2_5447 0.73 +0.8 6,254,625 - Pf6N2E2_5447 0.73 -0.3 6,254,762 + -1.0 6,254,762 + +0.8 6,254,763 - +0.2 6,254,763 - +0.8 6,254,775 + -0.4 6,254,814 - +4.9 6,254,815 + -1.2 6,254,833 + -0.0 6,254,918 + +1.4 6,254,957 + -1.4 6,255,048 + -0.0 6,255,048 + -1.6 6,255,048 + -0.9 6,255,050 + -0.6 6,255,062 - +5.1 6,255,064 + -0.6 6,255,064 + +1.6 6,255,073 - +4.7 6,255,090 + -0.6 6,255,179 + -0.9 6,255,180 - +3.8 6,255,300 - Pf6N2E2_5448 0.19 +3.1 6,255,300 - Pf6N2E2_5448 0.19 +3.6 6,255,300 - Pf6N2E2_5448 0.19 +3.4 6,255,318 - Pf6N2E2_5448 0.23 +3.9 6,255,318 - Pf6N2E2_5448 0.23 +3.8 6,255,334 + Pf6N2E2_5448 0.26 -1.3 6,255,335 - Pf6N2E2_5448 0.26 +2.3 6,255,335 - Pf6N2E2_5448 0.26 +4.1 6,255,345 - Pf6N2E2_5448 0.28 +2.5 6,255,378 + Pf6N2E2_5448 0.35 -0.1 6,255,378 + Pf6N2E2_5448 0.35 -1.2 6,255,378 + Pf6N2E2_5448 0.35 -0.0 6,255,379 - Pf6N2E2_5448 0.35 +2.1 6,255,420 + Pf6N2E2_5448 0.44 -0.8 6,255,420 + Pf6N2E2_5448 0.44 +0.1 6,255,420 + Pf6N2E2_5448 0.44 +1.4 6,255,420 + Pf6N2E2_5448 0.44 +0.2 6,255,421 - Pf6N2E2_5448 0.44 +0.5 6,255,421 - Pf6N2E2_5448 0.44 +2.8 6,255,421 - Pf6N2E2_5448 0.44 +3.4 6,255,421 - Pf6N2E2_5448 0.44 +2.7 6,255,456 + Pf6N2E2_5448 0.51 +0.3 6,255,456 + Pf6N2E2_5448 0.51 -0.0 6,255,457 - Pf6N2E2_5448 0.51 +3.9 6,255,457 - Pf6N2E2_5448 0.51 +3.1 6,255,457 - Pf6N2E2_5448 0.51 +1.7 6,255,457 - Pf6N2E2_5448 0.51 +3.8 6,255,457 - Pf6N2E2_5448 0.51 +2.8 6,255,457 - Pf6N2E2_5448 0.51 +3.6 6,255,457 - Pf6N2E2_5448 0.51 +4.1 6,255,457 - Pf6N2E2_5448 0.51 +3.2 6,255,457 - Pf6N2E2_5448 0.51 +2.2 6,255,457 - Pf6N2E2_5448 0.51 +3.0 6,255,623 + Pf6N2E2_5448 0.85 +0.6 6,255,646 - Pf6N2E2_5448 0.89 +3.0 6,255,811 + -1.4 6,255,812 - +3.0 6,255,863 + -0.4 6,255,906 + -0.5 6,255,907 - +0.7 6,255,996 - +0.6 6,256,012 + +0.8 6,256,012 + +0.2 6,256,012 + +1.0 6,256,012 + -0.0 6,256,013 - +0.0 6,256,013 - +0.4 6,256,013 - +0.1 6,256,013 - -0.3 6,256,056 + -0.0 6,256,056 + -0.3 6,256,057 - +0.3 6,256,057 - +0.4 6,256,057 - +0.2 6,256,057 - +1.1 6,256,195 + Pf6N2E2_5449 0.15 +0.5 6,256,195 + Pf6N2E2_5449 0.15 +0.2 6,256,440 + Pf6N2E2_5449 0.24 -1.5 6,256,441 - Pf6N2E2_5449 0.24 -0.5 6,256,447 + Pf6N2E2_5449 0.25 -0.2 6,256,448 - Pf6N2E2_5449 0.25 +1.1 6,256,511 - Pf6N2E2_5449 0.27 -0.0 6,256,591 + Pf6N2E2_5449 0.30 -1.1 6,256,591 + Pf6N2E2_5449 0.30 -0.2 6,256,591 + Pf6N2E2_5449 0.30 -1.9 6,256,592 - Pf6N2E2_5449 0.30 +1.0 6,256,592 - Pf6N2E2_5449 0.30 -1.3 6,256,592 - Pf6N2E2_5449 0.30 -0.4 6,256,592 - Pf6N2E2_5449 0.30 -0.3 6,256,649 - Pf6N2E2_5449 0.33 +0.5 6,256,649 - Pf6N2E2_5449 0.33 -0.6 6,256,682 + Pf6N2E2_5449 0.34 +0.4 6,256,682 + Pf6N2E2_5449 0.34 +0.8 6,256,682 + Pf6N2E2_5449 0.34 +0.2 6,256,682 + Pf6N2E2_5449 0.34 -1.2 6,256,683 - Pf6N2E2_5449 0.34 -0.5 6,256,683 - Pf6N2E2_5449 0.34 -0.4 6,256,683 - Pf6N2E2_5449 0.34 +1.9 6,256,684 + Pf6N2E2_5449 0.34 +0.2 6,256,684 + Pf6N2E2_5449 0.34 -0.4 6,256,684 + Pf6N2E2_5449 0.34 -1.3 6,256,684 + Pf6N2E2_5449 0.34 +0.4 6,256,684 + Pf6N2E2_5449 0.34 -0.3 6,256,684 + Pf6N2E2_5449 0.34 +0.3 6,256,684 + Pf6N2E2_5449 0.34 +1.4 6,256,685 - Pf6N2E2_5449 0.34 +1.3
Or see this region's nucleotide sequence