Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4841

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6140 and Pf6N2E2_6141 are separated by 166 nucleotidesPf6N2E2_6141 and Pf6N2E2_4841 are separated by 44 nucleotidesPf6N2E2_4841 and Pf6N2E2_4842 overlap by 11 nucleotidesPf6N2E2_4842 and Pf6N2E2_4843 are separated by 8 nucleotides Pf6N2E2_6140 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 5,596,527 to 5,599,419 _6140 Pf6N2E2_6141 - 5S RNA, at 5,599,586 to 5,599,705 _6141 Pf6N2E2_4841 - Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15), at 5,599,750 to 5,600,793 _4841 Pf6N2E2_4842 - Pantothenate kinase type III, CoaX-like (EC 2.7.1.33), at 5,600,783 to 5,601,532 _4842 Pf6N2E2_4843 - FIG00956941: hypothetical protein, at 5,601,541 to 5,601,996 _4843 Position (kb) 5599 5600 5601Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5599.418 kb on + strandat 5599.418 kb on + strandat 5599.418 kb on + strandat 5599.418 kb on + strandat 5599.418 kb on + strandat 5599.418 kb on + strandat 5599.418 kb on + strandat 5599.438 kb on + strandat 5599.438 kb on + strandat 5599.438 kb on + strandat 5599.737 kb on + strandat 5599.737 kb on + strandat 5599.779 kb on + strandat 5599.779 kb on + strandat 5599.780 kb on - strandat 5599.780 kb on - strandat 5599.780 kb on - strandat 5599.850 kb on + strandat 5599.850 kb on + strandat 5599.917 kb on + strand, within Pf6N2E2_4841at 5599.917 kb on + strand, within Pf6N2E2_4841at 5599.917 kb on + strand, within Pf6N2E2_4841at 5599.917 kb on + strand, within Pf6N2E2_4841at 5599.958 kb on + strand, within Pf6N2E2_4841at 5599.958 kb on + strand, within Pf6N2E2_4841at 5599.958 kb on + strand, within Pf6N2E2_4841at 5599.958 kb on + strand, within Pf6N2E2_4841at 5599.958 kb on + strand, within Pf6N2E2_4841at 5599.974 kb on + strand, within Pf6N2E2_4841at 5599.986 kb on + strand, within Pf6N2E2_4841at 5599.993 kb on + strand, within Pf6N2E2_4841at 5600.004 kb on + strand, within Pf6N2E2_4841at 5601.540 kb on + strandat 5601.540 kb on + strandat 5601.583 kb on + strandat 5601.583 kb on + strandat 5601.583 kb on + strandat 5601.583 kb on + strandat 5601.583 kb on + strandat 5601.583 kb on + strandat 5601.584 kb on - strandat 5601.584 kb on - strandat 5601.586 kb on + strandat 5601.586 kb on + strandat 5601.586 kb on + strandat 5601.586 kb on + strandat 5601.586 kb on + strandat 5601.586 kb on + strandat 5601.587 kb on - strand, within Pf6N2E2_4843at 5601.587 kb on - strand, within Pf6N2E2_4843at 5601.646 kb on + strand, within Pf6N2E2_4843at 5601.646 kb on + strand, within Pf6N2E2_4843at 5601.718 kb on - strand, within Pf6N2E2_4843at 5601.748 kb on + strand, within Pf6N2E2_4843at 5601.748 kb on + strand, within Pf6N2E2_4843at 5601.749 kb on - strand, within Pf6N2E2_4843

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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5,599,418 + -3.5
5,599,418 + -2.2
5,599,418 + -2.8
5,599,418 + +0.1
5,599,418 + -1.8
5,599,418 + -3.0
5,599,418 + -1.5
5,599,438 + -1.8
5,599,438 + +0.8
5,599,438 + -1.0
5,599,737 + +1.3
5,599,737 + +0.9
5,599,779 + -0.8
5,599,779 + +0.7
5,599,780 - +2.2
5,599,780 - +3.1
5,599,780 - +1.7
5,599,850 + +0.5
5,599,850 + -0.1
5,599,917 + Pf6N2E2_4841 0.16 +1.5
5,599,917 + Pf6N2E2_4841 0.16 -0.6
5,599,917 + Pf6N2E2_4841 0.16 +0.1
5,599,917 + Pf6N2E2_4841 0.16 -0.4
5,599,958 + Pf6N2E2_4841 0.20 -2.0
5,599,958 + Pf6N2E2_4841 0.20 -1.0
5,599,958 + Pf6N2E2_4841 0.20 -2.4
5,599,958 + Pf6N2E2_4841 0.20 -2.0
5,599,958 + Pf6N2E2_4841 0.20 -0.6
5,599,974 + Pf6N2E2_4841 0.21 -1.8
5,599,986 + Pf6N2E2_4841 0.23 -2.6
5,599,993 + Pf6N2E2_4841 0.23 -0.4
5,600,004 + Pf6N2E2_4841 0.24 +0.0
5,601,540 + +0.8
5,601,540 + +1.4
5,601,583 + +0.5
5,601,583 + +1.0
5,601,583 + +0.8
5,601,583 + +0.3
5,601,583 + -0.6
5,601,583 + +0.8
5,601,584 - -1.2
5,601,584 - +1.9
5,601,586 + +1.0
5,601,586 + +0.6
5,601,586 + +1.9
5,601,586 + +2.0
5,601,586 + +0.1
5,601,586 + +0.4
5,601,587 - Pf6N2E2_4843 0.10 +1.4
5,601,587 - Pf6N2E2_4843 0.10 -0.1
5,601,646 + Pf6N2E2_4843 0.23 +0.7
5,601,646 + Pf6N2E2_4843 0.23 +0.5
5,601,718 - Pf6N2E2_4843 0.39 +1.8
5,601,748 + Pf6N2E2_4843 0.45 +0.8
5,601,748 + Pf6N2E2_4843 0.45 +1.7
5,601,749 - Pf6N2E2_4843 0.46 +1.1

Or see this region's nucleotide sequence