Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4834 and Pf6N2E2_4835 are separated by 35 nucleotides Pf6N2E2_4835 and Pf6N2E2_4836 are separated by 135 nucleotides
Pf6N2E2_4834 - 2-nitropropane dioxygenase (EC 1.13.11.32), at 5,586,830 to 5,587,798
_4834
Pf6N2E2_4835 - Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-), at 5,587,834 to 5,588,265
_4835
Pf6N2E2_4836 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 5,588,401 to 5,589,435
_4836
Position (kb)
5587
5588
5589 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5586.882 kb on + strand at 5586.883 kb on - strand at 5586.963 kb on - strand, within Pf6N2E2_4834 at 5586.963 kb on - strand, within Pf6N2E2_4834 at 5587.104 kb on - strand, within Pf6N2E2_4834 at 5587.114 kb on + strand, within Pf6N2E2_4834 at 5587.114 kb on + strand, within Pf6N2E2_4834 at 5587.115 kb on - strand, within Pf6N2E2_4834 at 5587.115 kb on - strand, within Pf6N2E2_4834 at 5587.115 kb on - strand, within Pf6N2E2_4834 at 5587.115 kb on - strand, within Pf6N2E2_4834 at 5587.157 kb on - strand, within Pf6N2E2_4834 at 5587.157 kb on - strand, within Pf6N2E2_4834 at 5587.157 kb on - strand, within Pf6N2E2_4834 at 5587.157 kb on - strand, within Pf6N2E2_4834 at 5587.157 kb on - strand, within Pf6N2E2_4834 at 5587.158 kb on + strand, within Pf6N2E2_4834 at 5587.158 kb on + strand, within Pf6N2E2_4834 at 5587.158 kb on + strand, within Pf6N2E2_4834 at 5587.159 kb on - strand, within Pf6N2E2_4834 at 5587.210 kb on - strand, within Pf6N2E2_4834 at 5587.210 kb on - strand, within Pf6N2E2_4834 at 5587.210 kb on - strand, within Pf6N2E2_4834 at 5587.280 kb on + strand, within Pf6N2E2_4834 at 5587.280 kb on + strand, within Pf6N2E2_4834 at 5587.281 kb on - strand, within Pf6N2E2_4834 at 5587.281 kb on - strand, within Pf6N2E2_4834 at 5587.281 kb on - strand, within Pf6N2E2_4834 at 5587.281 kb on - strand, within Pf6N2E2_4834 at 5587.281 kb on - strand, within Pf6N2E2_4834 at 5587.289 kb on - strand, within Pf6N2E2_4834 at 5587.449 kb on + strand, within Pf6N2E2_4834 at 5587.449 kb on + strand, within Pf6N2E2_4834 at 5587.450 kb on - strand, within Pf6N2E2_4834 at 5587.466 kb on + strand, within Pf6N2E2_4834 at 5587.466 kb on + strand, within Pf6N2E2_4834 at 5587.466 kb on + strand, within Pf6N2E2_4834 at 5587.466 kb on + strand, within Pf6N2E2_4834 at 5587.466 kb on + strand, within Pf6N2E2_4834 at 5587.466 kb on + strand, within Pf6N2E2_4834 at 5587.466 kb on + strand, within Pf6N2E2_4834 at 5587.466 kb on + strand, within Pf6N2E2_4834 at 5587.466 kb on + strand, within Pf6N2E2_4834 at 5587.467 kb on - strand, within Pf6N2E2_4834 at 5587.467 kb on - strand, within Pf6N2E2_4834 at 5587.467 kb on - strand, within Pf6N2E2_4834 at 5587.467 kb on - strand, within Pf6N2E2_4834 at 5587.467 kb on - strand, within Pf6N2E2_4834 at 5587.467 kb on - strand, within Pf6N2E2_4834 at 5587.509 kb on - strand, within Pf6N2E2_4834 at 5587.584 kb on + strand, within Pf6N2E2_4834 at 5587.584 kb on + strand, within Pf6N2E2_4834 at 5587.585 kb on - strand, within Pf6N2E2_4834 at 5587.585 kb on - strand, within Pf6N2E2_4834 at 5587.585 kb on - strand, within Pf6N2E2_4834 at 5587.697 kb on - strand, within Pf6N2E2_4834 at 5587.805 kb on + strand at 5587.806 kb on - strand at 5587.814 kb on + strand at 5587.835 kb on + strand at 5587.835 kb on + strand at 5587.835 kb on + strand at 5587.836 kb on - strand at 5587.836 kb on - strand at 5588.300 kb on - strand at 5588.300 kb on - strand at 5588.302 kb on + strand at 5588.309 kb on + strand at 5588.309 kb on + strand at 5588.309 kb on + strand at 5588.309 kb on + strand at 5588.309 kb on + strand at 5588.310 kb on - strand at 5588.310 kb on - strand at 5588.400 kb on + strand at 5588.400 kb on + strand at 5588.400 kb on + strand at 5588.400 kb on + strand at 5588.415 kb on + strand at 5588.434 kb on + strand at 5588.536 kb on + strand, within Pf6N2E2_4836 at 5588.536 kb on + strand, within Pf6N2E2_4836 at 5588.557 kb on + strand, within Pf6N2E2_4836 at 5588.558 kb on - strand, within Pf6N2E2_4836 at 5588.558 kb on - strand, within Pf6N2E2_4836 at 5588.740 kb on + strand, within Pf6N2E2_4836 at 5588.741 kb on - strand, within Pf6N2E2_4836 at 5588.741 kb on - strand, within Pf6N2E2_4836 at 5588.931 kb on + strand, within Pf6N2E2_4836 at 5588.932 kb on - strand, within Pf6N2E2_4836 at 5588.932 kb on - strand, within Pf6N2E2_4836 at 5589.011 kb on - strand, within Pf6N2E2_4836 at 5589.139 kb on + strand, within Pf6N2E2_4836 at 5589.140 kb on - strand, within Pf6N2E2_4836 at 5589.218 kb on + strand, within Pf6N2E2_4836 at 5589.219 kb on - strand, within Pf6N2E2_4836
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 5,586,882 + -0.1 5,586,883 - +0.9 5,586,963 - Pf6N2E2_4834 0.14 +0.3 5,586,963 - Pf6N2E2_4834 0.14 -0.1 5,587,104 - Pf6N2E2_4834 0.28 +0.3 5,587,114 + Pf6N2E2_4834 0.29 +0.4 5,587,114 + Pf6N2E2_4834 0.29 +1.0 5,587,115 - Pf6N2E2_4834 0.29 +0.1 5,587,115 - Pf6N2E2_4834 0.29 +0.3 5,587,115 - Pf6N2E2_4834 0.29 +0.2 5,587,115 - Pf6N2E2_4834 0.29 +1.1 5,587,157 - Pf6N2E2_4834 0.34 +0.4 5,587,157 - Pf6N2E2_4834 0.34 -0.5 5,587,157 - Pf6N2E2_4834 0.34 +0.7 5,587,157 - Pf6N2E2_4834 0.34 +0.3 5,587,157 - Pf6N2E2_4834 0.34 +0.6 5,587,158 + Pf6N2E2_4834 0.34 -0.0 5,587,158 + Pf6N2E2_4834 0.34 -0.6 5,587,158 + Pf6N2E2_4834 0.34 -0.5 5,587,159 - Pf6N2E2_4834 0.34 -0.1 5,587,210 - Pf6N2E2_4834 0.39 +0.7 5,587,210 - Pf6N2E2_4834 0.39 +0.7 5,587,210 - Pf6N2E2_4834 0.39 +0.9 5,587,280 + Pf6N2E2_4834 0.46 +0.2 5,587,280 + Pf6N2E2_4834 0.46 +1.4 5,587,281 - Pf6N2E2_4834 0.47 +0.1 5,587,281 - Pf6N2E2_4834 0.47 +0.0 5,587,281 - Pf6N2E2_4834 0.47 +1.0 5,587,281 - Pf6N2E2_4834 0.47 +0.3 5,587,281 - Pf6N2E2_4834 0.47 +0.3 5,587,289 - Pf6N2E2_4834 0.47 +0.9 5,587,449 + Pf6N2E2_4834 0.64 +0.7 5,587,449 + Pf6N2E2_4834 0.64 +0.4 5,587,450 - Pf6N2E2_4834 0.64 +0.2 5,587,466 + Pf6N2E2_4834 0.66 +0.4 5,587,466 + Pf6N2E2_4834 0.66 +0.9 5,587,466 + Pf6N2E2_4834 0.66 +0.8 5,587,466 + Pf6N2E2_4834 0.66 -0.1 5,587,466 + Pf6N2E2_4834 0.66 -1.1 5,587,466 + Pf6N2E2_4834 0.66 +1.5 5,587,466 + Pf6N2E2_4834 0.66 -0.0 5,587,466 + Pf6N2E2_4834 0.66 +0.3 5,587,466 + Pf6N2E2_4834 0.66 +1.5 5,587,467 - Pf6N2E2_4834 0.66 -0.0 5,587,467 - Pf6N2E2_4834 0.66 +0.4 5,587,467 - Pf6N2E2_4834 0.66 +0.7 5,587,467 - Pf6N2E2_4834 0.66 -1.5 5,587,467 - Pf6N2E2_4834 0.66 -0.3 5,587,467 - Pf6N2E2_4834 0.66 -0.1 5,587,509 - Pf6N2E2_4834 0.70 +1.6 5,587,584 + Pf6N2E2_4834 0.78 +0.3 5,587,584 + Pf6N2E2_4834 0.78 +0.6 5,587,585 - Pf6N2E2_4834 0.78 +0.9 5,587,585 - Pf6N2E2_4834 0.78 +1.2 5,587,585 - Pf6N2E2_4834 0.78 -0.1 5,587,697 - Pf6N2E2_4834 0.89 +0.7 5,587,805 + -0.1 5,587,806 - +0.1 5,587,814 + -1.8 5,587,835 + -0.0 5,587,835 + -0.6 5,587,835 + +0.2 5,587,836 - +0.7 5,587,836 - +0.6 5,588,300 - +1.1 5,588,300 - +1.2 5,588,302 + +0.9 5,588,309 + -0.6 5,588,309 + -0.1 5,588,309 + +2.2 5,588,309 + +0.0 5,588,309 + +0.1 5,588,310 - +1.1 5,588,310 - +0.5 5,588,400 + +1.8 5,588,400 + -2.1 5,588,400 + +0.1 5,588,400 + +0.4 5,588,415 + +0.5 5,588,434 + +0.2 5,588,536 + Pf6N2E2_4836 0.13 +2.1 5,588,536 + Pf6N2E2_4836 0.13 +0.3 5,588,557 + Pf6N2E2_4836 0.15 +2.2 5,588,558 - Pf6N2E2_4836 0.15 +0.7 5,588,558 - Pf6N2E2_4836 0.15 -0.9 5,588,740 + Pf6N2E2_4836 0.33 +1.1 5,588,741 - Pf6N2E2_4836 0.33 -0.3 5,588,741 - Pf6N2E2_4836 0.33 -0.1 5,588,931 + Pf6N2E2_4836 0.51 -0.3 5,588,932 - Pf6N2E2_4836 0.51 +0.3 5,588,932 - Pf6N2E2_4836 0.51 +1.8 5,589,011 - Pf6N2E2_4836 0.59 +0.4 5,589,139 + Pf6N2E2_4836 0.71 -0.3 5,589,140 - Pf6N2E2_4836 0.71 +0.4 5,589,218 + Pf6N2E2_4836 0.79 +1.2 5,589,219 - Pf6N2E2_4836 0.79 +0.2
Or see this region's nucleotide sequence