Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4529 and Pf6N2E2_4530 overlap by 4 nucleotides Pf6N2E2_4530 and Pf6N2E2_4531 are separated by 157 nucleotides
Pf6N2E2_4529 - type III secretion protein HrpJ, at 5,262,731 to 5,263,858
_4529
Pf6N2E2_4530 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 5,263,855 to 5,265,942
_4530
Pf6N2E2_4531 - hypothetical protein, at 5,266,100 to 5,266,993
_4531
Position (kb) 5263
5264
5265
5266 Strain fitness (log2 ratio) -1
0
1
2
3 at 5262.892 kb on + strand, within Pf6N2E2_4529 at 5262.893 kb on - strand, within Pf6N2E2_4529 at 5262.893 kb on - strand, within Pf6N2E2_4529 at 5263.197 kb on + strand at 5263.198 kb on - strand, within Pf6N2E2_4529 at 5263.198 kb on - strand, within Pf6N2E2_4529 at 5263.198 kb on - strand, within Pf6N2E2_4529 at 5263.304 kb on + strand, within Pf6N2E2_4529 at 5263.304 kb on + strand, within Pf6N2E2_4529 at 5263.304 kb on + strand, within Pf6N2E2_4529 at 5263.305 kb on - strand, within Pf6N2E2_4529 at 5263.307 kb on + strand, within Pf6N2E2_4529 at 5263.307 kb on + strand, within Pf6N2E2_4529 at 5263.308 kb on - strand, within Pf6N2E2_4529 at 5263.308 kb on - strand, within Pf6N2E2_4529 at 5263.308 kb on - strand, within Pf6N2E2_4529 at 5263.552 kb on + strand, within Pf6N2E2_4529 at 5263.552 kb on + strand, within Pf6N2E2_4529 at 5263.638 kb on + strand, within Pf6N2E2_4529 at 5263.638 kb on + strand, within Pf6N2E2_4529 at 5263.639 kb on - strand, within Pf6N2E2_4529 at 5263.645 kb on + strand, within Pf6N2E2_4529 at 5263.646 kb on - strand, within Pf6N2E2_4529 at 5263.706 kb on + strand, within Pf6N2E2_4529 at 5264.032 kb on + strand at 5264.033 kb on - strand at 5264.551 kb on + strand, within Pf6N2E2_4530 at 5264.552 kb on - strand, within Pf6N2E2_4530 at 5264.552 kb on - strand, within Pf6N2E2_4530 at 5264.552 kb on - strand, within Pf6N2E2_4530 at 5264.613 kb on + strand, within Pf6N2E2_4530 at 5264.614 kb on - strand, within Pf6N2E2_4530 at 5264.828 kb on - strand, within Pf6N2E2_4530 at 5264.933 kb on - strand, within Pf6N2E2_4530 at 5265.010 kb on - strand, within Pf6N2E2_4530 at 5265.062 kb on - strand, within Pf6N2E2_4530 at 5265.062 kb on - strand, within Pf6N2E2_4530 at 5265.587 kb on - strand, within Pf6N2E2_4530 at 5265.587 kb on - strand, within Pf6N2E2_4530 at 5265.587 kb on - strand, within Pf6N2E2_4530 at 5265.981 kb on + strand at 5266.053 kb on - strand at 5266.053 kb on - strand at 5266.206 kb on - strand, within Pf6N2E2_4531
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 5,262,892 + Pf6N2E2_4529 0.14 -0.3 5,262,893 - Pf6N2E2_4529 0.14 +1.7 5,262,893 - Pf6N2E2_4529 0.14 +0.5 5,263,197 + +0.8 5,263,198 - Pf6N2E2_4529 0.41 +0.7 5,263,198 - Pf6N2E2_4529 0.41 +0.3 5,263,198 - Pf6N2E2_4529 0.41 -0.6 5,263,304 + Pf6N2E2_4529 0.51 -0.2 5,263,304 + Pf6N2E2_4529 0.51 +0.9 5,263,304 + Pf6N2E2_4529 0.51 +0.1 5,263,305 - Pf6N2E2_4529 0.51 -0.2 5,263,307 + Pf6N2E2_4529 0.51 -1.2 5,263,307 + Pf6N2E2_4529 0.51 -0.4 5,263,308 - Pf6N2E2_4529 0.51 -0.3 5,263,308 - Pf6N2E2_4529 0.51 -0.3 5,263,308 - Pf6N2E2_4529 0.51 +0.3 5,263,552 + Pf6N2E2_4529 0.73 +0.2 5,263,552 + Pf6N2E2_4529 0.73 +0.5 5,263,638 + Pf6N2E2_4529 0.80 -0.0 5,263,638 + Pf6N2E2_4529 0.80 +1.3 5,263,639 - Pf6N2E2_4529 0.80 +0.6 5,263,645 + Pf6N2E2_4529 0.81 -0.4 5,263,646 - Pf6N2E2_4529 0.81 -0.3 5,263,706 + Pf6N2E2_4529 0.86 +0.2 5,264,032 + +0.8 5,264,033 - -0.1 5,264,551 + Pf6N2E2_4530 0.33 -0.2 5,264,552 - Pf6N2E2_4530 0.33 +1.0 5,264,552 - Pf6N2E2_4530 0.33 -1.4 5,264,552 - Pf6N2E2_4530 0.33 +3.6 5,264,613 + Pf6N2E2_4530 0.36 +0.9 5,264,614 - Pf6N2E2_4530 0.36 +0.9 5,264,828 - Pf6N2E2_4530 0.47 +0.3 5,264,933 - Pf6N2E2_4530 0.52 -0.1 5,265,010 - Pf6N2E2_4530 0.55 +0.0 5,265,062 - Pf6N2E2_4530 0.58 +0.6 5,265,062 - Pf6N2E2_4530 0.58 +1.2 5,265,587 - Pf6N2E2_4530 0.83 +0.5 5,265,587 - Pf6N2E2_4530 0.83 -1.6 5,265,587 - Pf6N2E2_4530 0.83 +0.9 5,265,981 + -1.3 5,266,053 - +0.3 5,266,053 - +1.3 5,266,206 - Pf6N2E2_4531 0.12 +2.8
Or see this region's nucleotide sequence