Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2472 and Pf6N2E2_2473 are separated by 319 nucleotides Pf6N2E2_2473 and Pf6N2E2_2474 are separated by 140 nucleotides Pf6N2E2_2474 and Pf6N2E2_2475 are separated by 166 nucleotides Pf6N2E2_2475 and Pf6N2E2_2476 are separated by 56 nucleotides
Pf6N2E2_2472 - hypothetical protein, at 2,920,031 to 2,920,144
_2472
Pf6N2E2_2473 - Major outer membrane lipoprotein I, at 2,920,464 to 2,920,715
_2473
Pf6N2E2_2474 - ErfK/YbiS/YcfS/YnhG family protein, at 2,920,856 to 2,921,827
_2474
Pf6N2E2_2475 - FIG00953861: hypothetical protein, at 2,921,994 to 2,922,287
_2475
Pf6N2E2_2476 - Arylesterase precursor (EC 3.1.1.2), at 2,922,344 to 2,922,949
_2476
Position (kb)
2920
2921
2922 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2919.861 kb on + strand at 2919.861 kb on + strand at 2919.867 kb on - strand at 2919.895 kb on + strand at 2919.895 kb on + strand at 2919.895 kb on + strand at 2919.895 kb on + strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.965 kb on + strand at 2919.965 kb on + strand at 2919.965 kb on + strand at 2919.965 kb on + strand at 2919.966 kb on - strand at 2919.966 kb on - strand at 2919.966 kb on - strand at 2919.968 kb on + strand at 2919.968 kb on + strand at 2919.968 kb on + strand at 2919.968 kb on + strand at 2919.969 kb on - strand at 2920.059 kb on + strand, within Pf6N2E2_2472 at 2920.060 kb on - strand, within Pf6N2E2_2472 at 2920.077 kb on + strand, within Pf6N2E2_2472 at 2920.078 kb on - strand, within Pf6N2E2_2472 at 2920.121 kb on - strand, within Pf6N2E2_2472 at 2920.124 kb on + strand, within Pf6N2E2_2472 at 2920.125 kb on - strand, within Pf6N2E2_2472 at 2920.139 kb on + strand at 2920.139 kb on + strand at 2920.140 kb on - strand at 2920.224 kb on + strand at 2920.224 kb on + strand at 2920.225 kb on - strand at 2920.373 kb on - strand at 2920.376 kb on + strand at 2920.376 kb on + strand at 2920.377 kb on - strand at 2920.379 kb on + strand at 2920.379 kb on + strand at 2920.379 kb on + strand at 2920.380 kb on - strand at 2920.380 kb on - strand at 2920.385 kb on + strand at 2920.385 kb on + strand at 2920.392 kb on + strand at 2920.395 kb on + strand at 2920.395 kb on + strand at 2920.395 kb on + strand at 2920.395 kb on + strand at 2920.395 kb on + strand at 2920.395 kb on + strand at 2920.395 kb on + strand at 2920.399 kb on + strand at 2920.439 kb on + strand at 2920.439 kb on + strand at 2920.439 kb on + strand at 2920.439 kb on + strand at 2920.439 kb on + strand at 2920.439 kb on + strand at 2920.440 kb on - strand at 2920.440 kb on - strand at 2920.608 kb on + strand, within Pf6N2E2_2473 at 2920.713 kb on + strand at 2920.713 kb on + strand at 2920.713 kb on + strand at 2920.713 kb on + strand at 2920.713 kb on + strand at 2920.714 kb on - strand at 2920.716 kb on + strand at 2920.717 kb on - strand at 2920.806 kb on + strand at 2920.806 kb on + strand at 2920.807 kb on - strand at 2920.807 kb on - strand at 2920.857 kb on + strand at 2920.857 kb on + strand at 2920.858 kb on - strand at 2920.904 kb on - strand at 2921.088 kb on + strand, within Pf6N2E2_2474 at 2921.088 kb on + strand, within Pf6N2E2_2474 at 2921.089 kb on - strand, within Pf6N2E2_2474 at 2921.089 kb on - strand, within Pf6N2E2_2474 at 2921.118 kb on + strand, within Pf6N2E2_2474 at 2921.118 kb on + strand, within Pf6N2E2_2474 at 2921.119 kb on - strand, within Pf6N2E2_2474 at 2921.119 kb on - strand, within Pf6N2E2_2474 at 2921.119 kb on - strand, within Pf6N2E2_2474 at 2921.182 kb on + strand, within Pf6N2E2_2474 at 2921.183 kb on - strand, within Pf6N2E2_2474 at 2921.183 kb on - strand, within Pf6N2E2_2474 at 2921.469 kb on + strand, within Pf6N2E2_2474 at 2921.469 kb on + strand, within Pf6N2E2_2474 at 2921.470 kb on - strand, within Pf6N2E2_2474 at 2921.470 kb on - strand, within Pf6N2E2_2474 at 2921.497 kb on - strand, within Pf6N2E2_2474 at 2921.497 kb on - strand, within Pf6N2E2_2474 at 2921.497 kb on - strand, within Pf6N2E2_2474 at 2921.499 kb on + strand, within Pf6N2E2_2474 at 2921.500 kb on - strand, within Pf6N2E2_2474 at 2921.640 kb on + strand, within Pf6N2E2_2474 at 2921.652 kb on + strand, within Pf6N2E2_2474 at 2921.652 kb on + strand, within Pf6N2E2_2474 at 2921.653 kb on - strand, within Pf6N2E2_2474 at 2921.653 kb on - strand, within Pf6N2E2_2474 at 2921.653 kb on - strand, within Pf6N2E2_2474 at 2921.653 kb on - strand, within Pf6N2E2_2474 at 2921.653 kb on - strand, within Pf6N2E2_2474 at 2921.653 kb on - strand, within Pf6N2E2_2474 at 2921.685 kb on + strand, within Pf6N2E2_2474 at 2921.685 kb on + strand, within Pf6N2E2_2474 at 2921.685 kb on + strand, within Pf6N2E2_2474 at 2921.773 kb on + strand at 2921.877 kb on + strand at 2921.877 kb on + strand at 2921.878 kb on - strand at 2921.878 kb on - strand at 2921.878 kb on - strand at 2921.878 kb on - strand at 2921.878 kb on - strand at 2921.892 kb on + strand at 2921.893 kb on - strand at 2921.996 kb on - strand at 2921.996 kb on - strand at 2921.996 kb on - strand at 2922.372 kb on - strand at 2922.372 kb on - strand at 2922.372 kb on - strand at 2922.507 kb on + strand, within Pf6N2E2_2476 at 2922.508 kb on - strand, within Pf6N2E2_2476 at 2922.532 kb on - strand, within Pf6N2E2_2476 at 2922.543 kb on + strand, within Pf6N2E2_2476 at 2922.775 kb on + strand, within Pf6N2E2_2476
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 2,919,861 + -0.8 2,919,861 + -0.8 2,919,867 - +3.7 2,919,895 + +0.1 2,919,895 + -0.6 2,919,895 + -1.6 2,919,895 + +0.5 2,919,896 - +2.5 2,919,896 - +3.5 2,919,896 - +3.8 2,919,896 - +2.8 2,919,896 - +4.4 2,919,896 - +3.7 2,919,896 - +4.3 2,919,896 - +3.8 2,919,896 - +4.9 2,919,965 + -0.5 2,919,965 + -0.2 2,919,965 + +0.3 2,919,965 + -0.1 2,919,966 - +3.3 2,919,966 - +4.3 2,919,966 - +3.7 2,919,968 + +0.1 2,919,968 + -0.5 2,919,968 + -0.2 2,919,968 + +0.2 2,919,969 - +2.9 2,920,059 + Pf6N2E2_2472 0.25 -0.4 2,920,060 - Pf6N2E2_2472 0.25 +3.7 2,920,077 + Pf6N2E2_2472 0.40 -1.0 2,920,078 - Pf6N2E2_2472 0.41 +4.5 2,920,121 - Pf6N2E2_2472 0.79 +3.5 2,920,124 + Pf6N2E2_2472 0.82 -1.4 2,920,125 - Pf6N2E2_2472 0.82 +3.4 2,920,139 + -1.1 2,920,139 + +0.0 2,920,140 - +3.4 2,920,224 + -2.0 2,920,224 + +0.5 2,920,225 - +3.6 2,920,373 - -0.2 2,920,376 + +4.0 2,920,376 + +2.2 2,920,377 - +2.6 2,920,379 + +2.3 2,920,379 + +3.1 2,920,379 + +2.4 2,920,380 - +1.8 2,920,380 - +0.7 2,920,385 + +1.7 2,920,385 + +0.5 2,920,392 + +3.0 2,920,395 + +2.6 2,920,395 + +3.0 2,920,395 + +2.8 2,920,395 + +3.1 2,920,395 + +4.5 2,920,395 + +1.6 2,920,395 + +2.6 2,920,399 + +2.4 2,920,439 + +1.5 2,920,439 + +3.2 2,920,439 + +1.5 2,920,439 + +1.8 2,920,439 + +1.9 2,920,439 + +0.8 2,920,440 - +3.8 2,920,440 - +1.4 2,920,608 + Pf6N2E2_2473 0.57 +0.5 2,920,713 + +1.7 2,920,713 + +1.5 2,920,713 + +3.2 2,920,713 + +2.0 2,920,713 + +2.2 2,920,714 - +2.7 2,920,716 + +2.0 2,920,717 - +4.3 2,920,806 + +3.6 2,920,806 + +3.4 2,920,807 - +2.8 2,920,807 - +2.3 2,920,857 + +2.5 2,920,857 + +3.5 2,920,858 - +2.0 2,920,904 - +1.3 2,921,088 + Pf6N2E2_2474 0.24 +3.5 2,921,088 + Pf6N2E2_2474 0.24 +2.7 2,921,089 - Pf6N2E2_2474 0.24 +3.1 2,921,089 - Pf6N2E2_2474 0.24 +3.1 2,921,118 + Pf6N2E2_2474 0.27 +3.5 2,921,118 + Pf6N2E2_2474 0.27 +2.2 2,921,119 - Pf6N2E2_2474 0.27 +2.6 2,921,119 - Pf6N2E2_2474 0.27 +2.8 2,921,119 - Pf6N2E2_2474 0.27 +2.5 2,921,182 + Pf6N2E2_2474 0.34 +1.4 2,921,183 - Pf6N2E2_2474 0.34 +2.3 2,921,183 - Pf6N2E2_2474 0.34 +3.3 2,921,469 + Pf6N2E2_2474 0.63 +3.4 2,921,469 + Pf6N2E2_2474 0.63 +3.8 2,921,470 - Pf6N2E2_2474 0.63 +2.4 2,921,470 - Pf6N2E2_2474 0.63 +3.4 2,921,497 - Pf6N2E2_2474 0.66 +2.8 2,921,497 - Pf6N2E2_2474 0.66 +3.6 2,921,497 - Pf6N2E2_2474 0.66 +4.0 2,921,499 + Pf6N2E2_2474 0.66 +1.9 2,921,500 - Pf6N2E2_2474 0.66 +3.4 2,921,640 + Pf6N2E2_2474 0.81 +3.2 2,921,652 + Pf6N2E2_2474 0.82 +1.9 2,921,652 + Pf6N2E2_2474 0.82 +2.6 2,921,653 - Pf6N2E2_2474 0.82 +3.2 2,921,653 - Pf6N2E2_2474 0.82 +2.9 2,921,653 - Pf6N2E2_2474 0.82 +2.4 2,921,653 - Pf6N2E2_2474 0.82 +2.9 2,921,653 - Pf6N2E2_2474 0.82 +4.1 2,921,653 - Pf6N2E2_2474 0.82 +2.5 2,921,685 + Pf6N2E2_2474 0.85 +2.5 2,921,685 + Pf6N2E2_2474 0.85 +1.6 2,921,685 + Pf6N2E2_2474 0.85 +2.6 2,921,773 + +1.6 2,921,877 + +2.1 2,921,877 + +2.2 2,921,878 - +0.1 2,921,878 - -1.6 2,921,878 - +1.1 2,921,878 - +1.0 2,921,878 - +0.6 2,921,892 + +0.9 2,921,893 - +1.7 2,921,996 - +1.1 2,921,996 - +1.9 2,921,996 - +0.5 2,922,372 - +1.1 2,922,372 - +0.3 2,922,372 - +0.3 2,922,507 + Pf6N2E2_2476 0.27 +0.7 2,922,508 - Pf6N2E2_2476 0.27 +1.6 2,922,532 - Pf6N2E2_2476 0.31 +0.5 2,922,543 + Pf6N2E2_2476 0.33 +0.6 2,922,775 + Pf6N2E2_2476 0.71 +0.8
Or see this region's nucleotide sequence