Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1738 and Pf6N2E2_1739 are separated by 160 nucleotides Pf6N2E2_1739 and Pf6N2E2_1740 overlap by 11 nucleotides Pf6N2E2_1740 and Pf6N2E2_1741 overlap by 4 nucleotides
Pf6N2E2_1738 - Transcriptional regulator, GntR family, at 2,050,580 to 2,051,254
_1738
Pf6N2E2_1739 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 2,051,415 to 2,052,698
_1739
Pf6N2E2_1740 - Transketolase, C-terminal section (EC 2.2.1.1), at 2,052,688 to 2,053,698
_1740
Pf6N2E2_1741 - Transketolase, N-terminal section (EC 2.2.1.1), at 2,053,695 to 2,054,579
_1741
Position (kb)
2051
2052
2053 Strain fitness (log2 ratio)
-1
0
1
2 at 2050.533 kb on - strand at 2050.744 kb on - strand, within Pf6N2E2_1738 at 2051.258 kb on + strand at 2051.332 kb on - strand at 2051.336 kb on + strand at 2051.337 kb on - strand at 2051.337 kb on - strand at 2051.338 kb on + strand at 2051.417 kb on - strand at 2051.487 kb on - strand at 2051.525 kb on + strand at 2051.596 kb on + strand, within Pf6N2E2_1739 at 2051.623 kb on + strand, within Pf6N2E2_1739 at 2051.706 kb on - strand, within Pf6N2E2_1739 at 2051.706 kb on - strand, within Pf6N2E2_1739 at 2051.707 kb on + strand, within Pf6N2E2_1739 at 2051.707 kb on + strand, within Pf6N2E2_1739 at 2051.707 kb on + strand, within Pf6N2E2_1739 at 2051.707 kb on + strand, within Pf6N2E2_1739 at 2051.708 kb on - strand, within Pf6N2E2_1739 at 2051.734 kb on + strand, within Pf6N2E2_1739 at 2051.735 kb on - strand, within Pf6N2E2_1739 at 2052.161 kb on - strand, within Pf6N2E2_1739 at 2052.265 kb on + strand, within Pf6N2E2_1739 at 2052.266 kb on - strand, within Pf6N2E2_1739 at 2052.266 kb on - strand, within Pf6N2E2_1739 at 2052.584 kb on - strand at 2052.782 kb on + strand at 2052.782 kb on + strand at 2052.845 kb on - strand, within Pf6N2E2_1740 at 2052.845 kb on - strand, within Pf6N2E2_1740 at 2053.313 kb on + strand, within Pf6N2E2_1740 at 2053.313 kb on + strand, within Pf6N2E2_1740 at 2053.371 kb on - strand, within Pf6N2E2_1740 at 2053.629 kb on - strand at 2053.629 kb on - strand at 2053.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 2,050,533 - +0.6 2,050,744 - Pf6N2E2_1738 0.24 +1.9 2,051,258 + -1.7 2,051,332 - -0.5 2,051,336 + -0.3 2,051,337 - +1.1 2,051,337 - -0.2 2,051,338 + -0.2 2,051,417 - +0.0 2,051,487 - +1.0 2,051,525 + +0.2 2,051,596 + Pf6N2E2_1739 0.14 +1.2 2,051,623 + Pf6N2E2_1739 0.16 +0.2 2,051,706 - Pf6N2E2_1739 0.23 -0.3 2,051,706 - Pf6N2E2_1739 0.23 +0.3 2,051,707 + Pf6N2E2_1739 0.23 +1.3 2,051,707 + Pf6N2E2_1739 0.23 +0.7 2,051,707 + Pf6N2E2_1739 0.23 +1.6 2,051,707 + Pf6N2E2_1739 0.23 -0.5 2,051,708 - Pf6N2E2_1739 0.23 -0.4 2,051,734 + Pf6N2E2_1739 0.25 -0.3 2,051,735 - Pf6N2E2_1739 0.25 +0.2 2,052,161 - Pf6N2E2_1739 0.58 -0.3 2,052,265 + Pf6N2E2_1739 0.66 -1.0 2,052,266 - Pf6N2E2_1739 0.66 +0.2 2,052,266 - Pf6N2E2_1739 0.66 +0.7 2,052,584 - +0.2 2,052,782 + -0.7 2,052,782 + +0.6 2,052,845 - Pf6N2E2_1740 0.16 -1.0 2,052,845 - Pf6N2E2_1740 0.16 +1.1 2,053,313 + Pf6N2E2_1740 0.62 +1.3 2,053,313 + Pf6N2E2_1740 0.62 +0.4 2,053,371 - Pf6N2E2_1740 0.68 +0.7 2,053,629 - +1.3 2,053,629 - -1.3 2,053,665 - -0.0
Or see this region's nucleotide sequence