Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1630

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1629 and Pf6N2E2_1630 are separated by 44 nucleotidesPf6N2E2_1630 and Pf6N2E2_1631 are separated by 70 nucleotides Pf6N2E2_1629 - Non-ribosomal peptide synthetase modules, pyoverdine??, at 1,916,115 to 1,925,579 _1629 Pf6N2E2_1630 - COG1020: Non-ribosomal peptide synthetase modules and related proteins, at 1,925,624 to 1,930,441 _1630 Pf6N2E2_1631 - SyrP-like protein, at 1,930,512 to 1,931,501 _1631 Position (kb) 1925 1926 1927 1928 1929 1930 1931Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1925.135 kb on - strandat 1925.152 kb on + strandat 1925.204 kb on + strandat 1925.274 kb on + strandat 1925.274 kb on + strandat 1925.274 kb on + strandat 1925.274 kb on + strandat 1925.274 kb on + strandat 1925.274 kb on + strandat 1925.293 kb on + strandat 1925.294 kb on - strandat 1925.467 kb on + strandat 1925.468 kb on - strandat 1925.468 kb on - strandat 1925.471 kb on + strandat 1925.471 kb on + strandat 1925.472 kb on - strandat 1925.472 kb on - strandat 1925.600 kb on + strandat 1925.601 kb on - strandat 1925.618 kb on + strandat 1925.618 kb on + strandat 1925.619 kb on - strandat 1925.746 kb on + strandat 1925.964 kb on + strandat 1925.965 kb on - strandat 1926.130 kb on + strand, within Pf6N2E2_1630at 1926.361 kb on - strand, within Pf6N2E2_1630at 1926.361 kb on - strand, within Pf6N2E2_1630at 1926.361 kb on - strand, within Pf6N2E2_1630at 1926.361 kb on - strand, within Pf6N2E2_1630at 1926.380 kb on + strand, within Pf6N2E2_1630at 1926.380 kb on + strand, within Pf6N2E2_1630at 1926.618 kb on + strand, within Pf6N2E2_1630at 1926.618 kb on + strand, within Pf6N2E2_1630at 1926.618 kb on + strand, within Pf6N2E2_1630at 1926.619 kb on - strand, within Pf6N2E2_1630at 1926.619 kb on - strand, within Pf6N2E2_1630at 1926.747 kb on + strand, within Pf6N2E2_1630at 1927.569 kb on + strand, within Pf6N2E2_1630at 1927.569 kb on + strand, within Pf6N2E2_1630at 1927.641 kb on - strand, within Pf6N2E2_1630at 1927.713 kb on - strand, within Pf6N2E2_1630at 1927.713 kb on - strand, within Pf6N2E2_1630at 1927.881 kb on + strand, within Pf6N2E2_1630at 1927.911 kb on + strand, within Pf6N2E2_1630at 1927.911 kb on + strand, within Pf6N2E2_1630at 1927.911 kb on + strand, within Pf6N2E2_1630at 1927.912 kb on - strand, within Pf6N2E2_1630at 1927.912 kb on - strand, within Pf6N2E2_1630at 1928.421 kb on + strand, within Pf6N2E2_1630at 1928.493 kb on + strand, within Pf6N2E2_1630at 1928.645 kb on - strand, within Pf6N2E2_1630at 1928.719 kb on + strand, within Pf6N2E2_1630at 1928.720 kb on - strand, within Pf6N2E2_1630at 1928.720 kb on - strand, within Pf6N2E2_1630at 1928.835 kb on + strand, within Pf6N2E2_1630at 1928.835 kb on + strand, within Pf6N2E2_1630at 1928.835 kb on + strand, within Pf6N2E2_1630at 1928.836 kb on - strand, within Pf6N2E2_1630at 1928.836 kb on - strand, within Pf6N2E2_1630at 1928.836 kb on - strand, within Pf6N2E2_1630at 1928.836 kb on - strand, within Pf6N2E2_1630at 1929.073 kb on - strand, within Pf6N2E2_1630at 1929.073 kb on - strand, within Pf6N2E2_1630at 1929.183 kb on + strand, within Pf6N2E2_1630at 1929.184 kb on - strand, within Pf6N2E2_1630at 1929.226 kb on + strand, within Pf6N2E2_1630at 1929.226 kb on + strand, within Pf6N2E2_1630at 1929.226 kb on + strand, within Pf6N2E2_1630at 1929.226 kb on + strand, within Pf6N2E2_1630at 1929.227 kb on - strand, within Pf6N2E2_1630at 1929.227 kb on - strand, within Pf6N2E2_1630at 1929.227 kb on - strand, within Pf6N2E2_1630at 1929.335 kb on + strand, within Pf6N2E2_1630at 1929.336 kb on - strand, within Pf6N2E2_1630at 1929.336 kb on - strand, within Pf6N2E2_1630at 1929.528 kb on + strand, within Pf6N2E2_1630at 1929.529 kb on - strand, within Pf6N2E2_1630at 1929.529 kb on - strand, within Pf6N2E2_1630at 1929.577 kb on + strand, within Pf6N2E2_1630at 1929.745 kb on - strand, within Pf6N2E2_1630at 1929.745 kb on - strand, within Pf6N2E2_1630at 1929.822 kb on + strand, within Pf6N2E2_1630at 1929.822 kb on + strand, within Pf6N2E2_1630at 1929.822 kb on + strand, within Pf6N2E2_1630at 1929.822 kb on + strand, within Pf6N2E2_1630at 1929.823 kb on - strand, within Pf6N2E2_1630at 1929.823 kb on - strand, within Pf6N2E2_1630at 1929.823 kb on - strand, within Pf6N2E2_1630at 1929.823 kb on - strand, within Pf6N2E2_1630at 1929.864 kb on - strand, within Pf6N2E2_1630at 1929.967 kb on + strandat 1929.968 kb on - strandat 1929.968 kb on - strandat 1930.191 kb on + strandat 1930.191 kb on + strandat 1930.192 kb on - strandat 1930.192 kb on - strandat 1930.458 kb on + strandat 1930.458 kb on + strandat 1930.458 kb on + strandat 1930.459 kb on - strandat 1930.471 kb on + strandat 1930.787 kb on + strand, within Pf6N2E2_1631at 1930.788 kb on - strand, within Pf6N2E2_1631at 1930.991 kb on - strand, within Pf6N2E2_1631at 1931.002 kb on + strand, within Pf6N2E2_1631at 1931.003 kb on - strand, within Pf6N2E2_1631at 1931.111 kb on + strand, within Pf6N2E2_1631at 1931.111 kb on + strand, within Pf6N2E2_1631at 1931.111 kb on + strand, within Pf6N2E2_1631at 1931.112 kb on - strand, within Pf6N2E2_1631at 1931.112 kb on - strand, within Pf6N2E2_1631at 1931.207 kb on - strand, within Pf6N2E2_1631at 1931.207 kb on - strand, within Pf6N2E2_1631at 1931.207 kb on - strand, within Pf6N2E2_1631at 1931.209 kb on - strand, within Pf6N2E2_1631at 1931.252 kb on - strand, within Pf6N2E2_1631at 1931.252 kb on - strand, within Pf6N2E2_1631at 1931.277 kb on - strand, within Pf6N2E2_1631at 1931.361 kb on + strand, within Pf6N2E2_1631at 1931.362 kb on - strand, within Pf6N2E2_1631at 1931.425 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,925,135 - -0.5
1,925,152 + +0.8
1,925,204 + +0.5
1,925,274 + -0.1
1,925,274 + +0.7
1,925,274 + -1.8
1,925,274 + +0.9
1,925,274 + +0.1
1,925,274 + +2.5
1,925,293 + +0.4
1,925,294 - +0.1
1,925,467 + -0.2
1,925,468 - +1.0
1,925,468 - -0.3
1,925,471 + -0.6
1,925,471 + +0.2
1,925,472 - -0.6
1,925,472 - +2.0
1,925,600 + +0.0
1,925,601 - -0.4
1,925,618 + -1.3
1,925,618 + +0.4
1,925,619 - +0.1
1,925,746 + +3.6
1,925,964 + +1.0
1,925,965 - +1.0
1,926,130 + Pf6N2E2_1630 0.11 -1.6
1,926,361 - Pf6N2E2_1630 0.15 +0.2
1,926,361 - Pf6N2E2_1630 0.15 +1.1
1,926,361 - Pf6N2E2_1630 0.15 +1.6
1,926,361 - Pf6N2E2_1630 0.15 -0.2
1,926,380 + Pf6N2E2_1630 0.16 +1.5
1,926,380 + Pf6N2E2_1630 0.16 +0.7
1,926,618 + Pf6N2E2_1630 0.21 +0.4
1,926,618 + Pf6N2E2_1630 0.21 +1.5
1,926,618 + Pf6N2E2_1630 0.21 +1.9
1,926,619 - Pf6N2E2_1630 0.21 +2.2
1,926,619 - Pf6N2E2_1630 0.21 +1.2
1,926,747 + Pf6N2E2_1630 0.23 -0.4
1,927,569 + Pf6N2E2_1630 0.40 +1.2
1,927,569 + Pf6N2E2_1630 0.40 -0.4
1,927,641 - Pf6N2E2_1630 0.42 +0.9
1,927,713 - Pf6N2E2_1630 0.43 +0.6
1,927,713 - Pf6N2E2_1630 0.43 +0.5
1,927,881 + Pf6N2E2_1630 0.47 +1.2
1,927,911 + Pf6N2E2_1630 0.47 +0.4
1,927,911 + Pf6N2E2_1630 0.47 -1.4
1,927,911 + Pf6N2E2_1630 0.47 +0.6
1,927,912 - Pf6N2E2_1630 0.47 -2.5
1,927,912 - Pf6N2E2_1630 0.47 +0.8
1,928,421 + Pf6N2E2_1630 0.58 +1.2
1,928,493 + Pf6N2E2_1630 0.60 +1.2
1,928,645 - Pf6N2E2_1630 0.63 +0.9
1,928,719 + Pf6N2E2_1630 0.64 +0.3
1,928,720 - Pf6N2E2_1630 0.64 +0.0
1,928,720 - Pf6N2E2_1630 0.64 -0.9
1,928,835 + Pf6N2E2_1630 0.67 +0.7
1,928,835 + Pf6N2E2_1630 0.67 +0.4
1,928,835 + Pf6N2E2_1630 0.67 +0.4
1,928,836 - Pf6N2E2_1630 0.67 +0.3
1,928,836 - Pf6N2E2_1630 0.67 +0.6
1,928,836 - Pf6N2E2_1630 0.67 -0.2
1,928,836 - Pf6N2E2_1630 0.67 +0.5
1,929,073 - Pf6N2E2_1630 0.72 +0.2
1,929,073 - Pf6N2E2_1630 0.72 +1.1
1,929,183 + Pf6N2E2_1630 0.74 -0.1
1,929,184 - Pf6N2E2_1630 0.74 +0.4
1,929,226 + Pf6N2E2_1630 0.75 -0.8
1,929,226 + Pf6N2E2_1630 0.75 +0.6
1,929,226 + Pf6N2E2_1630 0.75 -0.1
1,929,226 + Pf6N2E2_1630 0.75 -1.2
1,929,227 - Pf6N2E2_1630 0.75 +1.9
1,929,227 - Pf6N2E2_1630 0.75 -0.7
1,929,227 - Pf6N2E2_1630 0.75 +0.6
1,929,335 + Pf6N2E2_1630 0.77 +1.2
1,929,336 - Pf6N2E2_1630 0.77 -1.6
1,929,336 - Pf6N2E2_1630 0.77 +0.9
1,929,528 + Pf6N2E2_1630 0.81 +1.8
1,929,529 - Pf6N2E2_1630 0.81 +0.9
1,929,529 - Pf6N2E2_1630 0.81 -2.5
1,929,577 + Pf6N2E2_1630 0.82 +0.4
1,929,745 - Pf6N2E2_1630 0.86 +1.5
1,929,745 - Pf6N2E2_1630 0.86 +0.1
1,929,822 + Pf6N2E2_1630 0.87 -0.4
1,929,822 + Pf6N2E2_1630 0.87 -0.2
1,929,822 + Pf6N2E2_1630 0.87 +0.2
1,929,822 + Pf6N2E2_1630 0.87 +0.0
1,929,823 - Pf6N2E2_1630 0.87 +0.4
1,929,823 - Pf6N2E2_1630 0.87 +0.1
1,929,823 - Pf6N2E2_1630 0.87 -0.4
1,929,823 - Pf6N2E2_1630 0.87 +0.9
1,929,864 - Pf6N2E2_1630 0.88 +1.4
1,929,967 + -1.6
1,929,968 - +0.6
1,929,968 - -0.1
1,930,191 + -0.2
1,930,191 + +0.2
1,930,192 - +0.0
1,930,192 - -1.5
1,930,458 + +1.2
1,930,458 + -0.0
1,930,458 + +1.2
1,930,459 - +2.7
1,930,471 + +0.9
1,930,787 + Pf6N2E2_1631 0.28 +1.1
1,930,788 - Pf6N2E2_1631 0.28 +0.1
1,930,991 - Pf6N2E2_1631 0.48 -0.0
1,931,002 + Pf6N2E2_1631 0.49 +0.4
1,931,003 - Pf6N2E2_1631 0.50 +0.1
1,931,111 + Pf6N2E2_1631 0.61 -0.1
1,931,111 + Pf6N2E2_1631 0.61 +1.0
1,931,111 + Pf6N2E2_1631 0.61 -0.2
1,931,112 - Pf6N2E2_1631 0.61 -0.5
1,931,112 - Pf6N2E2_1631 0.61 -0.4
1,931,207 - Pf6N2E2_1631 0.70 +1.7
1,931,207 - Pf6N2E2_1631 0.70 -0.5
1,931,207 - Pf6N2E2_1631 0.70 -1.2
1,931,209 - Pf6N2E2_1631 0.70 -0.1
1,931,252 - Pf6N2E2_1631 0.75 +1.9
1,931,252 - Pf6N2E2_1631 0.75 +0.2
1,931,277 - Pf6N2E2_1631 0.77 +1.1
1,931,361 + Pf6N2E2_1631 0.86 +1.4
1,931,362 - Pf6N2E2_1631 0.86 +0.6
1,931,425 - -0.1

Or see this region's nucleotide sequence