Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01626 and CCNA_01627 overlap by 4 nucleotides CCNA_01627 and CCNA_01628 are separated by 11 nucleotides CCNA_01628 and CCNA_01629 are separated by 123 nucleotides CCNA_01629 and CCNA_01630 are separated by 21 nucleotides
CCNA_01626: CCNA_01626 - pyridoxal phosphate biosynthetic protein pdxJ, at 1,747,568 to 1,748,332
_01626
CCNA_01627: CCNA_01627 - Holo-(acyl-carrier protein) synthase, at 1,748,329 to 1,748,730
_01627
CCNA_01628: CCNA_01628 - hypothetical protein, at 1,748,742 to 1,749,035
_01628
CCNA_01629: CCNA_01629 - signal peptidase I, at 1,749,159 to 1,750,004
_01629
CCNA_01630: CCNA_01630 - ribonuclease III, at 1,750,026 to 1,750,721
_01630
Position (kb) 1748
1749
1750 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1748.308 kb on + strand at 1748.321 kb on - strand at 1748.326 kb on + strand at 1748.706 kb on + strand at 1748.745 kb on + strand at 1748.757 kb on - strand at 1748.764 kb on + strand at 1748.806 kb on + strand, within CCNA_01628 at 1748.817 kb on - strand, within CCNA_01628 at 1748.909 kb on - strand, within CCNA_01628 at 1749.042 kb on + strand at 1749.042 kb on + strand at 1749.062 kb on + strand at 1749.062 kb on + strand at 1749.077 kb on + strand at 1749.077 kb on + strand at 1749.085 kb on - strand at 1749.085 kb on - strand at 1749.085 kb on - strand at 1749.091 kb on + strand at 1749.146 kb on + strand at 1749.178 kb on + strand at 1749.186 kb on - strand at 1749.251 kb on + strand, within CCNA_01629 at 1749.253 kb on + strand, within CCNA_01629 at 1749.259 kb on + strand, within CCNA_01629 at 1749.364 kb on - strand, within CCNA_01629 at 1749.366 kb on + strand, within CCNA_01629 at 1749.372 kb on + strand, within CCNA_01629 at 1749.388 kb on + strand, within CCNA_01629 at 1749.543 kb on + strand, within CCNA_01629 at 1749.551 kb on - strand, within CCNA_01629 at 1749.582 kb on + strand, within CCNA_01629 at 1749.591 kb on + strand, within CCNA_01629 at 1749.624 kb on + strand, within CCNA_01629 at 1749.636 kb on + strand, within CCNA_01629 at 1749.710 kb on + strand, within CCNA_01629 at 1749.710 kb on + strand, within CCNA_01629 at 1749.712 kb on + strand, within CCNA_01629 at 1749.720 kb on + strand, within CCNA_01629 at 1749.747 kb on + strand, within CCNA_01629 at 1749.913 kb on - strand, within CCNA_01629 at 1750.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 1,748,308 + +0.2 1,748,321 - -0.5 1,748,326 + +0.5 1,748,706 + -0.1 1,748,745 + +0.4 1,748,757 - -2.0 1,748,764 + +1.5 1,748,806 + CCNA_01628 0.22 -0.4 1,748,817 - CCNA_01628 0.26 -1.6 1,748,909 - CCNA_01628 0.57 -2.6 1,749,042 + +2.4 1,749,042 + +1.5 1,749,062 + +0.0 1,749,062 + +0.5 1,749,077 + +0.8 1,749,077 + +0.2 1,749,085 - +1.0 1,749,085 - -1.9 1,749,085 - -1.3 1,749,091 + -0.5 1,749,146 + +1.4 1,749,178 + -0.8 1,749,186 - +0.2 1,749,251 + CCNA_01629 0.11 +0.9 1,749,253 + CCNA_01629 0.11 +0.1 1,749,259 + CCNA_01629 0.12 +1.3 1,749,364 - CCNA_01629 0.24 +0.7 1,749,366 + CCNA_01629 0.24 -0.3 1,749,372 + CCNA_01629 0.25 -0.3 1,749,388 + CCNA_01629 0.27 +0.4 1,749,543 + CCNA_01629 0.45 +0.3 1,749,551 - CCNA_01629 0.46 -1.1 1,749,582 + CCNA_01629 0.50 +0.7 1,749,591 + CCNA_01629 0.51 +0.3 1,749,624 + CCNA_01629 0.55 -0.1 1,749,636 + CCNA_01629 0.56 -0.9 1,749,710 + CCNA_01629 0.65 -0.8 1,749,710 + CCNA_01629 0.65 +1.3 1,749,712 + CCNA_01629 0.65 -0.1 1,749,720 + CCNA_01629 0.66 +1.0 1,749,747 + CCNA_01629 0.70 -0.1 1,749,913 - CCNA_01629 0.89 +0.2 1,750,014 + +1.1
Or see this region's nucleotide sequence