Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04595

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
1,097,515	+		CA265_RS04590	0.17	+1.6
1,097,519	-		CA265_RS04590	0.18	+0.5
1,097,525	-		CA265_RS04590	0.18	-1.6
1,097,594	+		CA265_RS04590	0.26	-0.0
1,097,595	-		CA265_RS04590	0.26	+0.1
1,097,595	-		CA265_RS04590	0.26	-0.6
1,097,597	-		CA265_RS04590	0.27	-0.2
1,097,597	-		CA265_RS04590	0.27	-1.2
1,097,625	+		CA265_RS04590	0.30	-0.5
1,097,645	-		CA265_RS04590	0.32	+0.2
1,097,690	-		CA265_RS04590	0.37	-0.3
1,097,704	+		CA265_RS04590	0.39	-0.4
1,097,749	-		CA265_RS04590	0.44	-0.5
1,097,810	-		CA265_RS04590	0.51	-0.2
1,097,890	+		CA265_RS04590	0.60	+0.2
1,097,966	-		CA265_RS04590	0.69	-0.7
1,097,966	-		CA265_RS04590	0.69	-0.2
1,098,022	-		CA265_RS04590	0.76	+0.2
1,098,101	+		CA265_RS04590	0.85	-0.5
1,098,102	-		CA265_RS04590	0.85	-0.4
1,098,102	-		CA265_RS04590	0.85	+0.0
1,098,157	+				-0.3
1,098,158	-				-0.3
1,098,159	+				+0.5
1,098,253	-				+0.4
1,098,294	+				+0.8
1,098,396	+				+0.2
1,098,397	-				+0.4
1,098,397	-				-2.4
1,098,405	-				-0.5
1,098,406	+				-0.0
1,098,409	-				+0.0
1,098,606	+		CA265_RS04595	0.24	+0.7
1,098,610	+		CA265_RS04595	0.25	+1.2
1,098,611	-		CA265_RS04595	0.25	-0.6
1,098,619	-		CA265_RS04595	0.27	+0.1
1,098,674	+		CA265_RS04595	0.42	-0.4
1,098,685	-		CA265_RS04595	0.45	-1.0
1,098,696	-		CA265_RS04595	0.48	+0.2
1,098,704	+		CA265_RS04595	0.50	-0.4
1,098,739	-		CA265_RS04595	0.59	-0.0
1,098,759	-		CA265_RS04595	0.64	-0.1
1,098,914	+				-0.0
1,098,930	-				-0.6
1,098,930	-				-0.6
1,099,034	+		CA265_RS04600	0.12	+0.9
1,099,035	-		CA265_RS04600	0.12	+0.6
1,099,138	-		CA265_RS04600	0.24	-1.7
1,099,138	-		CA265_RS04600	0.24	+0.6
1,099,139	+		CA265_RS04600	0.25	-2.0
1,099,145	+		CA265_RS04600	0.25	+0.8
1,099,216	+		CA265_RS04600	0.34	-1.3
1,099,273	+		CA265_RS04600	0.40	-1.3
1,099,274	-		CA265_RS04600	0.41	-1.1
1,099,275	+		CA265_RS04600	0.41	+0.6
1,099,275	+		CA265_RS04600	0.41	-0.4
1,099,343	+		CA265_RS04600	0.49	-0.6
1,099,346	+		CA265_RS04600	0.49	+0.0
1,099,458	-		CA265_RS04600	0.62	-0.3
1,099,477	+		CA265_RS04600	0.65	+0.3
1,099,516	+		CA265_RS04600	0.69	+3.2
1,099,616	+		CA265_RS04600	0.81	-0.2
1,099,636	-		CA265_RS04600	0.84	+0.2
1,099,687	-		CA265_RS04600	0.90	+0.6
1,099,705	-				+0.6
1,099,706	+				-0.1
1,099,707	-				-0.2
1,099,777	+				+1.2
1,099,796	+				+0.4
1,099,798	+				-0.1
1,099,828	+				-0.3
1,099,828	+				-0.2