Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2401

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2400 and Ac3H11_2401 overlap by 4 nucleotidesAc3H11_2401 and Ac3H11_2402 are separated by 27 nucleotidesAc3H11_2402 and Ac3H11_2403 are separated by 74 nucleotides Ac3H11_2400 - FIG000988: Predicted permease, at 656,752 to 657,876 _2400 Ac3H11_2401 - FIG000906: Predicted Permease, at 657,873 to 658,991 _2401 Ac3H11_2402 - Sirohydrochlorin cobaltochelatase (EC 4.99.1.3), at 659,019 to 659,390 _2402 Ac3H11_2403 - Alkanesulfonate utilization operon LysR-family regulator CbI, at 659,465 to 660,406 _2403 Position (kb) 657 658 659Strain fitness (log2 ratio) -3 -2 -1 0 1at 658.998 kb on + strandat 658.999 kb on - strandat 659.140 kb on - strand, within Ac3H11_2402at 659.464 kb on + strandat 659.780 kb on + strand, within Ac3H11_2403at 659.927 kb on + strand, within Ac3H11_2403

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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658,998 + -1.0
658,999 - -0.3
659,140 - Ac3H11_2402 0.33 -0.2
659,464 + +0.1
659,780 + Ac3H11_2403 0.33 -2.8
659,927 + Ac3H11_2403 0.49 -2.7

Or see this region's nucleotide sequence