Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30515

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30510 and AZOBR_RS30515 are separated by 387 nucleotidesAZOBR_RS30515 and AZOBR_RS30520 are separated by 279 nucleotides AZOBR_RS30510: AZOBR_RS30510 - heme iron utilization protein, at 191,945 to 192,664 _RS30510 AZOBR_RS30515: AZOBR_RS30515 - phosphoenolpyruvate carboxykinase, at 193,052 to 194,875 _RS30515 AZOBR_RS30520: AZOBR_RS30520 - flagellar motor protein MotA, at 195,155 to 196,015 _RS30520 Position (kb) 193 194 195Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 192.287 kb on + strand, within AZOBR_RS30510at 192.479 kb on + strand, within AZOBR_RS30510at 192.479 kb on + strand, within AZOBR_RS30510at 192.479 kb on + strand, within AZOBR_RS30510at 192.961 kb on + strandat 192.962 kb on - strandat 193.238 kb on + strand, within AZOBR_RS30515at 193.238 kb on + strand, within AZOBR_RS30515at 193.239 kb on - strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strandat 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.482 kb on - strand, within AZOBR_RS30515at 193.482 kb on - strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.688 kb on + strand, within AZOBR_RS30515at 193.821 kb on - strand, within AZOBR_RS30515at 193.821 kb on - strand, within AZOBR_RS30515at 194.327 kb on + strand, within AZOBR_RS30515at 194.327 kb on + strand, within AZOBR_RS30515at 194.327 kb on + strand, within AZOBR_RS30515at 194.328 kb on - strand, within AZOBR_RS30515at 194.348 kb on + strand, within AZOBR_RS30515at 194.349 kb on - strand, within AZOBR_RS30515at 194.444 kb on + strand, within AZOBR_RS30515at 194.444 kb on + strand, within AZOBR_RS30515at 194.445 kb on - strand, within AZOBR_RS30515at 194.459 kb on + strand, within AZOBR_RS30515at 194.459 kb on + strand, within AZOBR_RS30515at 194.513 kb on + strand, within AZOBR_RS30515at 194.513 kb on + strand, within AZOBR_RS30515at 195.007 kb on + strandat 195.008 kb on - strandat 195.035 kb on - strandat 195.207 kb on - strandat 195.523 kb on - strand, within AZOBR_RS30520at 195.539 kb on + strand, within AZOBR_RS30520at 195.539 kb on + strand, within AZOBR_RS30520at 195.539 kb on + strand, within AZOBR_RS30520at 195.803 kb on + strand, within AZOBR_RS30520at 195.804 kb on - strand, within AZOBR_RS30520at 195.845 kb on + strand, within AZOBR_RS30520at 195.846 kb on - strand, within AZOBR_RS30520at 195.863 kb on + strand, within AZOBR_RS30520at 195.863 kb on + strand, within AZOBR_RS30520at 195.864 kb on - strand, within AZOBR_RS30520at 195.864 kb on - strand, within AZOBR_RS30520at 195.867 kb on - strand, within AZOBR_RS30520

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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192,287 + AZOBR_RS30510 0.47 +0.4
192,479 + AZOBR_RS30510 0.74 +0.2
192,479 + AZOBR_RS30510 0.74 -0.2
192,479 + AZOBR_RS30510 0.74 -0.3
192,961 + -1.6
192,962 - -0.4
193,238 + AZOBR_RS30515 0.10 -0.9
193,238 + AZOBR_RS30515 0.10 -0.9
193,239 - AZOBR_RS30515 0.10 -0.0
193,289 + AZOBR_RS30515 0.13 -0.7
193,289 + AZOBR_RS30515 0.13 -0.6
193,289 + AZOBR_RS30515 0.13 -0.6
193,289 + AZOBR_RS30515 0.13 -0.9
193,289 + AZOBR_RS30515 0.13 +0.6
193,290 - AZOBR_RS30515 0.13 -0.0
193,290 - AZOBR_RS30515 0.13 +0.0
193,290 - +1.8
193,290 - AZOBR_RS30515 0.13 -0.6
193,290 - AZOBR_RS30515 0.13 -0.2
193,290 - AZOBR_RS30515 0.13 +0.4
193,290 - AZOBR_RS30515 0.13 -0.4
193,290 - AZOBR_RS30515 0.13 -0.6
193,406 + AZOBR_RS30515 0.19 -0.2
193,406 + AZOBR_RS30515 0.19 -0.6
193,406 + AZOBR_RS30515 0.19 -0.6
193,406 + AZOBR_RS30515 0.19 -0.9
193,406 + AZOBR_RS30515 0.19 -1.0
193,406 + AZOBR_RS30515 0.19 -0.6
193,406 + AZOBR_RS30515 0.19 -1.8
193,406 + AZOBR_RS30515 0.19 -1.1
193,406 + AZOBR_RS30515 0.19 -0.4
193,406 + AZOBR_RS30515 0.19 -0.9
193,406 + AZOBR_RS30515 0.19 -0.5
193,406 + AZOBR_RS30515 0.19 -0.2
193,406 + AZOBR_RS30515 0.19 -0.4
193,406 + AZOBR_RS30515 0.19 -0.2
193,406 + AZOBR_RS30515 0.19 +0.0
193,407 - AZOBR_RS30515 0.19 -1.0
193,407 - AZOBR_RS30515 0.19 -0.4
193,407 - AZOBR_RS30515 0.19 -0.5
193,407 - AZOBR_RS30515 0.19 -0.8
193,407 - AZOBR_RS30515 0.19 -0.8
193,407 - AZOBR_RS30515 0.19 -0.4
193,407 - AZOBR_RS30515 0.19 -0.3
193,407 - AZOBR_RS30515 0.19 -0.3
193,407 - AZOBR_RS30515 0.19 -0.5
193,407 - AZOBR_RS30515 0.19 +1.2
193,407 - AZOBR_RS30515 0.19 -0.5
193,407 - AZOBR_RS30515 0.19 -0.8
193,482 - AZOBR_RS30515 0.24 -1.0
193,482 - AZOBR_RS30515 0.24 -0.2
193,637 + AZOBR_RS30515 0.32 -0.4
193,637 + AZOBR_RS30515 0.32 -0.6
193,637 + AZOBR_RS30515 0.32 -0.7
193,637 + AZOBR_RS30515 0.32 -0.7
193,637 + AZOBR_RS30515 0.32 +0.0
193,638 - AZOBR_RS30515 0.32 -0.5
193,638 - AZOBR_RS30515 0.32 -2.2
193,638 - AZOBR_RS30515 0.32 -0.0
193,638 - AZOBR_RS30515 0.32 -1.0
193,638 - AZOBR_RS30515 0.32 -0.4
193,638 - AZOBR_RS30515 0.32 +1.0
193,688 + AZOBR_RS30515 0.35 -0.5
193,821 - AZOBR_RS30515 0.42 -0.2
193,821 - AZOBR_RS30515 0.42 -0.7
194,327 + AZOBR_RS30515 0.70 -0.4
194,327 + AZOBR_RS30515 0.70 -0.7
194,327 + AZOBR_RS30515 0.70 -0.5
194,328 - AZOBR_RS30515 0.70 -0.5
194,348 + AZOBR_RS30515 0.71 -0.3
194,349 - AZOBR_RS30515 0.71 -0.6
194,444 + AZOBR_RS30515 0.76 -0.5
194,444 + AZOBR_RS30515 0.76 -0.5
194,445 - AZOBR_RS30515 0.76 -0.3
194,459 + AZOBR_RS30515 0.77 -0.9
194,459 + AZOBR_RS30515 0.77 -1.0
194,513 + AZOBR_RS30515 0.80 -0.3
194,513 + AZOBR_RS30515 0.80 -0.6
195,007 + -0.2
195,008 - -1.2
195,035 - -2.5
195,207 - -1.5
195,523 - AZOBR_RS30520 0.43 -1.4
195,539 + AZOBR_RS30520 0.45 -1.5
195,539 + AZOBR_RS30520 0.45 +0.8
195,539 + AZOBR_RS30520 0.45 -1.3
195,803 + AZOBR_RS30520 0.75 -2.0
195,804 - AZOBR_RS30520 0.75 -1.6
195,845 + AZOBR_RS30520 0.80 -1.0
195,846 - AZOBR_RS30520 0.80 -1.6
195,863 + AZOBR_RS30520 0.82 -2.8
195,863 + AZOBR_RS30520 0.82 -0.8
195,864 - AZOBR_RS30520 0.82 -2.2
195,864 - AZOBR_RS30520 0.82 -1.2
195,867 - AZOBR_RS30520 0.83 -1.3

Or see this region's nucleotide sequence