Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19500

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS19495 and AZOBR_RS19500 are separated by 270 nucleotides AZOBR_RS19495: AZOBR_RS19495 - hypothetical protein, at 1,147,787 to 1,148,056 _RS19495 AZOBR_RS19500: AZOBR_RS19500 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 1,148,327 to 1,148,995 _RS19500 Position (kb) 1148 1149Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1147.535 kb on + strandat 1148.188 kb on - strandat 1148.196 kb on + strandat 1148.197 kb on - strandat 1148.197 kb on - strandat 1148.197 kb on - strandat 1148.197 kb on - strandat 1148.225 kb on + strandat 1148.225 kb on + strandat 1148.225 kb on + strandat 1148.225 kb on + strandat 1148.225 kb on + strandat 1148.226 kb on - strandat 1148.594 kb on + strand, within AZOBR_RS19500at 1149.133 kb on - strandat 1149.133 kb on - strandat 1149.366 kb on + strandat 1149.366 kb on + strandat 1149.366 kb on + strandat 1149.367 kb on - strandat 1149.367 kb on - strandat 1149.367 kb on - strandat 1149.367 kb on - strandat 1149.367 kb on - strandat 1149.531 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
1,147,535 + +0.7
1,148,188 - -2.5
1,148,196 + +0.3
1,148,197 - -3.8
1,148,197 - -4.3
1,148,197 - -4.3
1,148,197 - -5.4
1,148,225 + +1.0
1,148,225 + -1.4
1,148,225 + -3.0
1,148,225 + -3.9
1,148,225 + -0.7
1,148,226 - -5.1
1,148,594 + AZOBR_RS19500 0.40 -6.3
1,149,133 - -3.6
1,149,133 - -4.7
1,149,366 + -3.7
1,149,366 + -2.7
1,149,366 + -5.3
1,149,367 - -0.7
1,149,367 - -3.2
1,149,367 - -7.2
1,149,367 - -5.1
1,149,367 - -0.7
1,149,531 + -6.9

Or see this region's nucleotide sequence