Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10680

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS10675 and AZOBR_RS10680 are separated by 228 nucleotidesAZOBR_RS10680 and AZOBR_RS10685 are separated by 87 nucleotides AZOBR_RS10675: AZOBR_RS10675 - serine/threonine protein kinase, at 2,238,927 to 2,240,954 _RS10675 AZOBR_RS10680: AZOBR_RS10680 - adenylosuccinate synthetase, at 2,241,183 to 2,242,475 _RS10680 AZOBR_RS10685: AZOBR_RS10685 - ATP phosphoribosyltransferase, at 2,242,563 to 2,243,726 _RS10685 Position (kb) 2241 2242 2243Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2240.480 kb on - strand, within AZOBR_RS10675at 2240.482 kb on + strand, within AZOBR_RS10675at 2240.482 kb on + strand, within AZOBR_RS10675at 2240.834 kb on - strandat 2241.104 kb on + strandat 2241.104 kb on + strandat 2241.105 kb on - strandat 2241.105 kb on - strandat 2242.778 kb on - strand, within AZOBR_RS10685at 2242.778 kb on - strand, within AZOBR_RS10685at 2242.778 kb on - strand, within AZOBR_RS10685

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
2,240,480 - AZOBR_RS10675 0.77 -1.0
2,240,482 + AZOBR_RS10675 0.77 -1.1
2,240,482 + AZOBR_RS10675 0.77 -0.4
2,240,834 - -0.4
2,241,104 + +0.2
2,241,104 + -0.4
2,241,105 - +0.2
2,241,105 - +0.5
2,242,778 - AZOBR_RS10685 0.18 -3.4
2,242,778 - AZOBR_RS10685 0.18 -1.7
2,242,778 - AZOBR_RS10685 0.18 -3.9

Or see this region's nucleotide sequence