Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS02325

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS02320 and AZOBR_RS02325 are separated by 88 nucleotidesAZOBR_RS02325 and AZOBR_RS02335 are separated by 985 nucleotides AZOBR_RS02320: AZOBR_RS02320 - amidase, at 479,215 to 479,961 _RS02320 AZOBR_RS02325: AZOBR_RS02325 - ABC transporter substrate-binding protein, at 480,050 to 481,561 _RS02325 AZOBR_RS02335: AZOBR_RS02335 - peptide ABC transporter permease, at 482,547 to 483,407 _RS02335 Position (kb) 480 481 482Strain fitness (log2 ratio) -1 0 1 2at 479.083 kb on - strandat 479.254 kb on + strandat 479.254 kb on + strandat 479.255 kb on - strandat 479.488 kb on + strand, within AZOBR_RS02320at 479.488 kb on + strand, within AZOBR_RS02320at 479.488 kb on + strand, within AZOBR_RS02320at 479.488 kb on + strand, within AZOBR_RS02320at 479.489 kb on - strand, within AZOBR_RS02320at 479.489 kb on - strand, within AZOBR_RS02320at 479.489 kb on - strand, within AZOBR_RS02320at 479.578 kb on + strand, within AZOBR_RS02320at 479.579 kb on - strand, within AZOBR_RS02320at 479.587 kb on + strand, within AZOBR_RS02320at 479.746 kb on + strand, within AZOBR_RS02320at 479.746 kb on + strand, within AZOBR_RS02320at 479.746 kb on + strand, within AZOBR_RS02320at 479.747 kb on - strand, within AZOBR_RS02320at 479.747 kb on - strand, within AZOBR_RS02320at 479.747 kb on - strand, within AZOBR_RS02320at 479.812 kb on + strand, within AZOBR_RS02320at 479.813 kb on - strand, within AZOBR_RS02320at 479.935 kb on + strandat 479.936 kb on - strandat 480.242 kb on + strand, within AZOBR_RS02325at 480.242 kb on + strand, within AZOBR_RS02325at 480.242 kb on + strand, within AZOBR_RS02325at 480.242 kb on + strand, within AZOBR_RS02325at 480.243 kb on - strand, within AZOBR_RS02325at 480.243 kb on - strand, within AZOBR_RS02325at 480.254 kb on + strand, within AZOBR_RS02325at 480.254 kb on + strand, within AZOBR_RS02325at 480.341 kb on + strand, within AZOBR_RS02325at 480.341 kb on + strand, within AZOBR_RS02325at 480.341 kb on + strand, within AZOBR_RS02325at 480.342 kb on - strand, within AZOBR_RS02325at 480.461 kb on + strand, within AZOBR_RS02325at 480.462 kb on - strand, within AZOBR_RS02325at 480.462 kb on - strand, within AZOBR_RS02325at 480.686 kb on + strand, within AZOBR_RS02325at 480.686 kb on + strand, within AZOBR_RS02325at 480.686 kb on + strand, within AZOBR_RS02325at 480.803 kb on + strand, within AZOBR_RS02325at 480.804 kb on - strand, within AZOBR_RS02325at 480.804 kb on - strand, within AZOBR_RS02325at 481.028 kb on + strand, within AZOBR_RS02325at 481.028 kb on + strand, within AZOBR_RS02325at 481.050 kb on - strand, within AZOBR_RS02325at 481.050 kb on - strand, within AZOBR_RS02325at 481.055 kb on + strand, within AZOBR_RS02325at 481.055 kb on + strand, within AZOBR_RS02325at 481.056 kb on - strand, within AZOBR_RS02325at 481.056 kb on - strand, within AZOBR_RS02325at 481.143 kb on - strand, within AZOBR_RS02325at 481.259 kb on + strand, within AZOBR_RS02325at 481.307 kb on + strand, within AZOBR_RS02325at 481.307 kb on + strand, within AZOBR_RS02325at 481.308 kb on - strand, within AZOBR_RS02325at 481.308 kb on - strand, within AZOBR_RS02325at 481.308 kb on - strand, within AZOBR_RS02325at 481.325 kb on + strand, within AZOBR_RS02325at 481.335 kb on - strand, within AZOBR_RS02325at 481.409 kb on + strand, within AZOBR_RS02325at 482.236 kb on + strandat 482.237 kb on - strandat 482.237 kb on - strandat 482.237 kb on - strandat 482.237 kb on - strandat 482.237 kb on - strandat 482.413 kb on + strandat 482.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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479,083 - +1.0
479,254 + -0.3
479,254 + -0.2
479,255 - -0.2
479,488 + AZOBR_RS02320 0.37 -1.2
479,488 + AZOBR_RS02320 0.37 +0.1
479,488 + AZOBR_RS02320 0.37 -0.9
479,488 + AZOBR_RS02320 0.37 -0.3
479,489 - AZOBR_RS02320 0.37 +0.3
479,489 - AZOBR_RS02320 0.37 +0.9
479,489 - AZOBR_RS02320 0.37 +0.3
479,578 + AZOBR_RS02320 0.49 -1.2
479,579 - AZOBR_RS02320 0.49 +0.8
479,587 + AZOBR_RS02320 0.50 -0.6
479,746 + AZOBR_RS02320 0.71 -0.6
479,746 + AZOBR_RS02320 0.71 -0.3
479,746 + AZOBR_RS02320 0.71 +0.4
479,747 - AZOBR_RS02320 0.71 +1.0
479,747 - AZOBR_RS02320 0.71 +0.1
479,747 - AZOBR_RS02320 0.71 +1.0
479,812 + AZOBR_RS02320 0.80 +0.6
479,813 - AZOBR_RS02320 0.80 -0.0
479,935 + -0.1
479,936 - -0.2
480,242 + AZOBR_RS02325 0.13 -0.4
480,242 + AZOBR_RS02325 0.13 +0.1
480,242 + AZOBR_RS02325 0.13 +1.3
480,242 + AZOBR_RS02325 0.13 -0.1
480,243 - AZOBR_RS02325 0.13 -1.2
480,243 - AZOBR_RS02325 0.13 -0.2
480,254 + AZOBR_RS02325 0.13 -0.2
480,254 + AZOBR_RS02325 0.13 -0.1
480,341 + AZOBR_RS02325 0.19 +0.1
480,341 + AZOBR_RS02325 0.19 +0.8
480,341 + AZOBR_RS02325 0.19 -0.2
480,342 - AZOBR_RS02325 0.19 +0.8
480,461 + AZOBR_RS02325 0.27 -0.5
480,462 - AZOBR_RS02325 0.27 -0.0
480,462 - AZOBR_RS02325 0.27 +0.7
480,686 + AZOBR_RS02325 0.42 +0.4
480,686 + AZOBR_RS02325 0.42 -0.1
480,686 + AZOBR_RS02325 0.42 +0.2
480,803 + AZOBR_RS02325 0.50 +0.4
480,804 - AZOBR_RS02325 0.50 +0.1
480,804 - AZOBR_RS02325 0.50 -0.2
481,028 + AZOBR_RS02325 0.65 +0.2
481,028 + AZOBR_RS02325 0.65 +0.6
481,050 - AZOBR_RS02325 0.66 +1.4
481,050 - AZOBR_RS02325 0.66 -0.3
481,055 + AZOBR_RS02325 0.66 -0.2
481,055 + AZOBR_RS02325 0.66 +0.4
481,056 - AZOBR_RS02325 0.67 +2.0
481,056 - AZOBR_RS02325 0.67 +0.6
481,143 - AZOBR_RS02325 0.72 -0.2
481,259 + AZOBR_RS02325 0.80 -0.1
481,307 + AZOBR_RS02325 0.83 -0.3
481,307 + AZOBR_RS02325 0.83 -0.2
481,308 - AZOBR_RS02325 0.83 +0.3
481,308 - AZOBR_RS02325 0.83 -0.0
481,308 - AZOBR_RS02325 0.83 +0.1
481,325 + AZOBR_RS02325 0.84 -0.3
481,335 - AZOBR_RS02325 0.85 +0.2
481,409 + AZOBR_RS02325 0.90 -0.3
482,236 + +0.3
482,237 - -0.1
482,237 - -0.5
482,237 - +0.2
482,237 - +0.6
482,237 - +1.0
482,413 + +0.5
482,413 + +0.0

Or see this region's nucleotide sequence