Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS20565

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS20555 and ABZR86_RS20560 are separated by 122 nucleotidesABZR86_RS20560 and ABZR86_RS20565 are separated by 33 nucleotidesABZR86_RS20565 and ABZR86_RS20570 are separated by 239 nucleotides ABZR86_RS20555: ABZR86_RS20555 - isovaleryl-CoA dehydrogenase, at 57,988 to 59,145 _RS20555 ABZR86_RS20560: ABZR86_RS20560 - hypothetical protein, at 59,268 to 59,522 _RS20560 ABZR86_RS20565: ABZR86_RS20565 - S8 family serine peptidase, at 59,556 to 62,360 _RS20565 ABZR86_RS20570: ABZR86_RS20570 - acetyl-CoA C-acyltransferase, at 62,600 to 63,784 _RS20570 Position (kb) 59 60 61 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 58.786 kb on + strand, within ABZR86_RS20555at 58.787 kb on - strand, within ABZR86_RS20555at 58.787 kb on - strand, within ABZR86_RS20555at 58.861 kb on + strand, within ABZR86_RS20555at 58.861 kb on + strand, within ABZR86_RS20555at 58.861 kb on + strand, within ABZR86_RS20555at 58.861 kb on + strand, within ABZR86_RS20555at 58.862 kb on - strand, within ABZR86_RS20555at 58.862 kb on - strand, within ABZR86_RS20555at 58.862 kb on - strand, within ABZR86_RS20555at 58.862 kb on - strand, within ABZR86_RS20555at 58.862 kb on - strand, within ABZR86_RS20555at 58.862 kb on - strand, within ABZR86_RS20555at 58.862 kb on - strand, within ABZR86_RS20555at 58.895 kb on - strand, within ABZR86_RS20555at 58.895 kb on - strand, within ABZR86_RS20555at 59.023 kb on + strand, within ABZR86_RS20555at 59.024 kb on - strand, within ABZR86_RS20555at 59.024 kb on - strand, within ABZR86_RS20555at 59.024 kb on - strand, within ABZR86_RS20555at 59.129 kb on - strandat 59.129 kb on - strandat 59.488 kb on - strand, within ABZR86_RS20560at 59.488 kb on - strand, within ABZR86_RS20560at 59.488 kb on - strand, within ABZR86_RS20560at 59.496 kb on + strand, within ABZR86_RS20560at 59.497 kb on - strandat 59.614 kb on + strandat 59.614 kb on + strandat 59.615 kb on - strandat 59.615 kb on - strandat 59.615 kb on - strandat 59.615 kb on - strandat 59.623 kb on + strandat 59.624 kb on - strandat 59.624 kb on - strandat 59.690 kb on - strandat 59.690 kb on - strandat 59.953 kb on + strand, within ABZR86_RS20565at 59.953 kb on + strand, within ABZR86_RS20565at 59.953 kb on + strand, within ABZR86_RS20565at 59.953 kb on + strand, within ABZR86_RS20565at 59.954 kb on - strand, within ABZR86_RS20565at 59.954 kb on - strand, within ABZR86_RS20565at 59.954 kb on - strand, within ABZR86_RS20565at 59.954 kb on - strand, within ABZR86_RS20565at 59.968 kb on + strand, within ABZR86_RS20565at 59.969 kb on - strand, within ABZR86_RS20565at 59.969 kb on - strand, within ABZR86_RS20565at 60.020 kb on - strand, within ABZR86_RS20565at 60.020 kb on - strand, within ABZR86_RS20565at 60.136 kb on + strand, within ABZR86_RS20565at 60.137 kb on - strand, within ABZR86_RS20565at 60.164 kb on - strand, within ABZR86_RS20565at 60.353 kb on - strand, within ABZR86_RS20565at 60.664 kb on + strand, within ABZR86_RS20565at 60.664 kb on + strand, within ABZR86_RS20565at 60.664 kb on + strand, within ABZR86_RS20565at 60.665 kb on - strand, within ABZR86_RS20565at 60.665 kb on - strand, within ABZR86_RS20565at 60.665 kb on - strand, within ABZR86_RS20565at 60.665 kb on - strand, within ABZR86_RS20565at 60.730 kb on + strand, within ABZR86_RS20565at 60.730 kb on + strand, within ABZR86_RS20565at 60.730 kb on + strand, within ABZR86_RS20565at 60.731 kb on - strand, within ABZR86_RS20565at 60.786 kb on - strand, within ABZR86_RS20565at 60.838 kb on + strand, within ABZR86_RS20565at 60.839 kb on - strand, within ABZR86_RS20565at 60.862 kb on + strand, within ABZR86_RS20565at 60.863 kb on - strand, within ABZR86_RS20565at 60.863 kb on - strand, within ABZR86_RS20565at 60.863 kb on - strand, within ABZR86_RS20565at 60.863 kb on - strand, within ABZR86_RS20565at 60.952 kb on + strand, within ABZR86_RS20565at 60.952 kb on + strand, within ABZR86_RS20565at 60.952 kb on + strand, within ABZR86_RS20565at 60.952 kb on + strand, within ABZR86_RS20565at 60.953 kb on - strand, within ABZR86_RS20565at 60.953 kb on - strand, within ABZR86_RS20565at 60.953 kb on - strand, within ABZR86_RS20565at 60.953 kb on - strand, within ABZR86_RS20565at 60.953 kb on - strand, within ABZR86_RS20565at 61.025 kb on + strand, within ABZR86_RS20565at 61.026 kb on - strand, within ABZR86_RS20565at 61.026 kb on - strand, within ABZR86_RS20565at 61.026 kb on - strand, within ABZR86_RS20565at 61.026 kb on - strand, within ABZR86_RS20565at 61.026 kb on - strand, within ABZR86_RS20565at 61.026 kb on - strand, within ABZR86_RS20565at 61.121 kb on + strand, within ABZR86_RS20565at 61.123 kb on + strand, within ABZR86_RS20565at 61.123 kb on + strand, within ABZR86_RS20565at 61.123 kb on + strand, within ABZR86_RS20565at 61.123 kb on + strand, within ABZR86_RS20565at 61.123 kb on + strand, within ABZR86_RS20565at 61.123 kb on + strand, within ABZR86_RS20565at 61.123 kb on + strand, within ABZR86_RS20565at 61.123 kb on + strand, within ABZR86_RS20565at 61.123 kb on + strand, within ABZR86_RS20565at 61.124 kb on - strand, within ABZR86_RS20565at 61.124 kb on - strand, within ABZR86_RS20565at 61.124 kb on - strand, within ABZR86_RS20565at 61.124 kb on - strand, within ABZR86_RS20565at 61.375 kb on + strand, within ABZR86_RS20565at 61.375 kb on + strand, within ABZR86_RS20565at 61.375 kb on + strand, within ABZR86_RS20565at 61.376 kb on - strand, within ABZR86_RS20565at 61.450 kb on + strand, within ABZR86_RS20565at 61.450 kb on + strand, within ABZR86_RS20565at 61.450 kb on + strand, within ABZR86_RS20565at 61.450 kb on + strand, within ABZR86_RS20565at 61.450 kb on + strand, within ABZR86_RS20565at 61.450 kb on + strand, within ABZR86_RS20565at 61.450 kb on + strand, within ABZR86_RS20565at 61.450 kb on + strand, within ABZR86_RS20565at 61.450 kb on + strand, within ABZR86_RS20565at 61.450 kb on + strand, within ABZR86_RS20565at 61.450 kb on + strand, within ABZR86_RS20565at 61.450 kb on + strand, within ABZR86_RS20565at 61.451 kb on - strand, within ABZR86_RS20565at 61.451 kb on - strand, within ABZR86_RS20565at 61.451 kb on - strand, within ABZR86_RS20565at 61.451 kb on - strand, within ABZR86_RS20565at 61.451 kb on - strand, within ABZR86_RS20565at 61.453 kb on + strand, within ABZR86_RS20565at 61.453 kb on + strand, within ABZR86_RS20565at 61.454 kb on - strand, within ABZR86_RS20565at 61.454 kb on - strand, within ABZR86_RS20565at 61.454 kb on - strand, within ABZR86_RS20565at 61.454 kb on - strand, within ABZR86_RS20565at 61.519 kb on + strand, within ABZR86_RS20565at 61.519 kb on + strand, within ABZR86_RS20565at 61.519 kb on + strand, within ABZR86_RS20565at 61.519 kb on + strand, within ABZR86_RS20565at 61.519 kb on + strand, within ABZR86_RS20565at 61.520 kb on - strand, within ABZR86_RS20565at 61.520 kb on - strand, within ABZR86_RS20565at 61.520 kb on - strand, within ABZR86_RS20565at 61.520 kb on - strand, within ABZR86_RS20565at 61.549 kb on + strand, within ABZR86_RS20565at 61.550 kb on - strand, within ABZR86_RS20565at 61.550 kb on - strand, within ABZR86_RS20565at 61.550 kb on - strand, within ABZR86_RS20565at 61.683 kb on + strand, within ABZR86_RS20565at 61.683 kb on + strand, within ABZR86_RS20565at 61.684 kb on - strand, within ABZR86_RS20565at 61.720 kb on + strand, within ABZR86_RS20565at 61.720 kb on + strand, within ABZR86_RS20565at 61.768 kb on + strand, within ABZR86_RS20565at 61.768 kb on + strand, within ABZR86_RS20565at 62.047 kb on + strand, within ABZR86_RS20565at 62.047 kb on + strand, within ABZR86_RS20565at 62.047 kb on + strand, within ABZR86_RS20565at 62.047 kb on + strand, within ABZR86_RS20565at 62.048 kb on - strand, within ABZR86_RS20565at 62.165 kb on + strandat 62.541 kb on + strandat 63.056 kb on + strand, within ABZR86_RS20570at 63.104 kb on + strand, within ABZR86_RS20570at 63.104 kb on + strand, within ABZR86_RS20570at 63.105 kb on - strand, within ABZR86_RS20570at 63.105 kb on - strand, within ABZR86_RS20570at 63.105 kb on - strand, within ABZR86_RS20570

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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58,786 + ABZR86_RS20555 0.69 -1.2
58,787 - ABZR86_RS20555 0.69 -0.6
58,787 - ABZR86_RS20555 0.69 -1.0
58,861 + ABZR86_RS20555 0.75 +0.2
58,861 + ABZR86_RS20555 0.75 -0.5
58,861 + ABZR86_RS20555 0.75 -0.8
58,861 + ABZR86_RS20555 0.75 +0.6
58,862 - ABZR86_RS20555 0.75 +0.0
58,862 - ABZR86_RS20555 0.75 -0.1
58,862 - ABZR86_RS20555 0.75 -0.5
58,862 - ABZR86_RS20555 0.75 -0.2
58,862 - ABZR86_RS20555 0.75 -0.1
58,862 - ABZR86_RS20555 0.75 +0.4
58,862 - ABZR86_RS20555 0.75 -0.3
58,895 - ABZR86_RS20555 0.78 -0.2
58,895 - ABZR86_RS20555 0.78 -0.6
59,023 + ABZR86_RS20555 0.89 +0.8
59,024 - ABZR86_RS20555 0.89 +0.1
59,024 - ABZR86_RS20555 0.89 -1.0
59,024 - ABZR86_RS20555 0.89 +0.6
59,129 - +0.1
59,129 - -0.5
59,488 - ABZR86_RS20560 0.86 +0.6
59,488 - ABZR86_RS20560 0.86 +1.8
59,488 - ABZR86_RS20560 0.86 -0.3
59,496 + ABZR86_RS20560 0.89 -0.1
59,497 - -0.0
59,614 + -0.2
59,614 + +0.4
59,615 - +0.3
59,615 - -0.1
59,615 - +0.7
59,615 - -1.5
59,623 + +0.6
59,624 - +0.3
59,624 - +0.9
59,690 - +0.2
59,690 - -0.6
59,953 + ABZR86_RS20565 0.14 +0.2
59,953 + ABZR86_RS20565 0.14 -0.2
59,953 + ABZR86_RS20565 0.14 -0.5
59,953 + ABZR86_RS20565 0.14 -0.2
59,954 - ABZR86_RS20565 0.14 -0.3
59,954 - ABZR86_RS20565 0.14 +0.4
59,954 - ABZR86_RS20565 0.14 -0.5
59,954 - ABZR86_RS20565 0.14 -0.6
59,968 + ABZR86_RS20565 0.15 +0.5
59,969 - ABZR86_RS20565 0.15 +0.0
59,969 - ABZR86_RS20565 0.15 +0.4
60,020 - ABZR86_RS20565 0.17 -0.0
60,020 - ABZR86_RS20565 0.17 +0.7
60,136 + ABZR86_RS20565 0.21 +0.2
60,137 - ABZR86_RS20565 0.21 +0.0
60,164 - ABZR86_RS20565 0.22 +0.0
60,353 - ABZR86_RS20565 0.28 +0.3
60,664 + ABZR86_RS20565 0.40 -0.5
60,664 + ABZR86_RS20565 0.40 +0.4
60,664 + ABZR86_RS20565 0.40 -0.4
60,665 - ABZR86_RS20565 0.40 -0.1
60,665 - ABZR86_RS20565 0.40 -0.4
60,665 - ABZR86_RS20565 0.40 -0.0
60,665 - ABZR86_RS20565 0.40 -1.5
60,730 + ABZR86_RS20565 0.42 +0.7
60,730 + ABZR86_RS20565 0.42 +0.7
60,730 + ABZR86_RS20565 0.42 +0.1
60,731 - ABZR86_RS20565 0.42 -0.2
60,786 - ABZR86_RS20565 0.44 +0.6
60,838 + ABZR86_RS20565 0.46 +0.8
60,839 - ABZR86_RS20565 0.46 +0.5
60,862 + ABZR86_RS20565 0.47 +0.8
60,863 - ABZR86_RS20565 0.47 +0.5
60,863 - ABZR86_RS20565 0.47 -0.1
60,863 - ABZR86_RS20565 0.47 +0.1
60,863 - ABZR86_RS20565 0.47 +0.1
60,952 + ABZR86_RS20565 0.50 +0.0
60,952 + ABZR86_RS20565 0.50 -0.8
60,952 + ABZR86_RS20565 0.50 +0.2
60,952 + ABZR86_RS20565 0.50 +0.4
60,953 - ABZR86_RS20565 0.50 -0.1
60,953 - ABZR86_RS20565 0.50 +0.5
60,953 - ABZR86_RS20565 0.50 -0.4
60,953 - ABZR86_RS20565 0.50 -0.2
60,953 - ABZR86_RS20565 0.50 +0.5
61,025 + ABZR86_RS20565 0.52 -0.0
61,026 - ABZR86_RS20565 0.52 +0.3
61,026 - ABZR86_RS20565 0.52 -0.2
61,026 - ABZR86_RS20565 0.52 +0.4
61,026 - ABZR86_RS20565 0.52 -0.1
61,026 - ABZR86_RS20565 0.52 -0.1
61,026 - ABZR86_RS20565 0.52 -2.2
61,121 + ABZR86_RS20565 0.56 +0.8
61,123 + ABZR86_RS20565 0.56 +0.5
61,123 + ABZR86_RS20565 0.56 -0.1
61,123 + ABZR86_RS20565 0.56 -2.2
61,123 + ABZR86_RS20565 0.56 -0.3
61,123 + ABZR86_RS20565 0.56 -0.4
61,123 + ABZR86_RS20565 0.56 +0.1
61,123 + ABZR86_RS20565 0.56 -0.5
61,123 + ABZR86_RS20565 0.56 +0.4
61,123 + ABZR86_RS20565 0.56 +0.6
61,124 - ABZR86_RS20565 0.56 +1.6
61,124 - ABZR86_RS20565 0.56 +0.4
61,124 - ABZR86_RS20565 0.56 +0.8
61,124 - ABZR86_RS20565 0.56 -0.1
61,375 + ABZR86_RS20565 0.65 +0.6
61,375 + ABZR86_RS20565 0.65 +0.1
61,375 + ABZR86_RS20565 0.65 +0.2
61,376 - ABZR86_RS20565 0.65 +0.5
61,450 + ABZR86_RS20565 0.68 -0.5
61,450 + ABZR86_RS20565 0.68 +1.0
61,450 + ABZR86_RS20565 0.68 -0.4
61,450 + ABZR86_RS20565 0.68 -0.7
61,450 + ABZR86_RS20565 0.68 +0.4
61,450 + ABZR86_RS20565 0.68 +0.8
61,450 + ABZR86_RS20565 0.68 +0.2
61,450 + ABZR86_RS20565 0.68 -0.7
61,450 + ABZR86_RS20565 0.68 -0.6
61,450 + ABZR86_RS20565 0.68 +0.3
61,450 + ABZR86_RS20565 0.68 -0.4
61,450 + ABZR86_RS20565 0.68 -0.0
61,451 - ABZR86_RS20565 0.68 -0.3
61,451 - ABZR86_RS20565 0.68 +0.8
61,451 - ABZR86_RS20565 0.68 +0.5
61,451 - ABZR86_RS20565 0.68 -0.8
61,451 - ABZR86_RS20565 0.68 +0.3
61,453 + ABZR86_RS20565 0.68 -0.8
61,453 + ABZR86_RS20565 0.68 -1.0
61,454 - ABZR86_RS20565 0.68 +0.2
61,454 - ABZR86_RS20565 0.68 +0.3
61,454 - ABZR86_RS20565 0.68 -1.2
61,454 - ABZR86_RS20565 0.68 -0.1
61,519 + ABZR86_RS20565 0.70 -0.3
61,519 + ABZR86_RS20565 0.70 +0.8
61,519 + ABZR86_RS20565 0.70 +1.9
61,519 + ABZR86_RS20565 0.70 +0.2
61,519 + ABZR86_RS20565 0.70 -0.7
61,520 - ABZR86_RS20565 0.70 -0.2
61,520 - ABZR86_RS20565 0.70 +0.6
61,520 - ABZR86_RS20565 0.70 +0.3
61,520 - ABZR86_RS20565 0.70 -0.2
61,549 + ABZR86_RS20565 0.71 +0.5
61,550 - ABZR86_RS20565 0.71 -2.9
61,550 - ABZR86_RS20565 0.71 -0.6
61,550 - ABZR86_RS20565 0.71 -0.0
61,683 + ABZR86_RS20565 0.76 +0.5
61,683 + ABZR86_RS20565 0.76 +0.6
61,684 - ABZR86_RS20565 0.76 +1.1
61,720 + ABZR86_RS20565 0.77 -1.5
61,720 + ABZR86_RS20565 0.77 +0.3
61,768 + ABZR86_RS20565 0.79 +1.2
61,768 + ABZR86_RS20565 0.79 +0.2
62,047 + ABZR86_RS20565 0.89 -1.0
62,047 + ABZR86_RS20565 0.89 +0.0
62,047 + ABZR86_RS20565 0.89 +0.4
62,047 + ABZR86_RS20565 0.89 +0.5
62,048 - ABZR86_RS20565 0.89 -0.7
62,165 + -1.5
62,541 + +0.3
63,056 + ABZR86_RS20570 0.38 +0.7
63,104 + ABZR86_RS20570 0.43 +0.3
63,104 + ABZR86_RS20570 0.43 +0.5
63,105 - ABZR86_RS20570 0.43 +0.5
63,105 - ABZR86_RS20570 0.43 +0.5
63,105 - ABZR86_RS20570 0.43 +0.5

Or see this region's nucleotide sequence