Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10450

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10440 and ABZR86_RS10445 are separated by 36 nucleotidesABZR86_RS10445 and ABZR86_RS10450 are separated by 39 nucleotidesABZR86_RS10450 and ABZR86_RS10455 are separated by 36 nucleotidesABZR86_RS10455 and ABZR86_RS10460 are separated by 370 nucleotides ABZR86_RS10440: ABZR86_RS10440 - secondary thiamine-phosphate synthase enzyme YjbQ, at 2,324,630 to 2,325,070 _RS10440 ABZR86_RS10445: ABZR86_RS10445 - pyridoxamine 5'-phosphate oxidase, at 2,325,107 to 2,325,694 _RS10445 ABZR86_RS10450: ABZR86_RS10450 - kinase, at 2,325,734 to 2,326,564 _RS10450 ABZR86_RS10455: ABZR86_RS10455 - heavy metal-binding domain-containing protein, at 2,326,601 to 2,326,921 _RS10455 ABZR86_RS10460: ABZR86_RS10460 - hypothetical protein, at 2,327,292 to 2,328,014 _RS10460 Position (kb) 2325 2326 2327Strain fitness (log2 ratio) -1 0 1 2at 2324.917 kb on + strand, within ABZR86_RS10440at 2324.917 kb on + strand, within ABZR86_RS10440at 2325.016 kb on + strand, within ABZR86_RS10440at 2325.017 kb on - strand, within ABZR86_RS10440at 2325.748 kb on + strandat 2325.748 kb on + strandat 2325.748 kb on + strandat 2325.748 kb on + strandat 2325.748 kb on + strandat 2325.748 kb on + strandat 2325.791 kb on + strandat 2325.792 kb on - strandat 2325.825 kb on - strand, within ABZR86_RS10450at 2325.825 kb on - strand, within ABZR86_RS10450at 2325.941 kb on + strand, within ABZR86_RS10450at 2325.941 kb on + strand, within ABZR86_RS10450at 2325.942 kb on - strand, within ABZR86_RS10450at 2325.945 kb on - strand, within ABZR86_RS10450at 2325.945 kb on - strand, within ABZR86_RS10450at 2326.088 kb on + strand, within ABZR86_RS10450at 2326.089 kb on - strand, within ABZR86_RS10450at 2326.636 kb on - strand, within ABZR86_RS10455at 2326.680 kb on + strand, within ABZR86_RS10455at 2326.776 kb on + strand, within ABZR86_RS10455at 2326.776 kb on + strand, within ABZR86_RS10455at 2326.777 kb on - strand, within ABZR86_RS10455at 2326.777 kb on - strand, within ABZR86_RS10455at 2326.777 kb on - strand, within ABZR86_RS10455at 2326.786 kb on + strand, within ABZR86_RS10455at 2326.786 kb on + strand, within ABZR86_RS10455at 2326.964 kb on + strandat 2326.964 kb on + strandat 2326.965 kb on - strandat 2327.071 kb on + strandat 2327.101 kb on - strandat 2327.116 kb on + strandat 2327.117 kb on - strandat 2327.139 kb on - strandat 2327.148 kb on + strandat 2327.148 kb on + strandat 2327.149 kb on - strandat 2327.150 kb on + strandat 2327.150 kb on + strandat 2327.150 kb on + strandat 2327.150 kb on + strandat 2327.150 kb on + strandat 2327.150 kb on + strandat 2327.151 kb on - strandat 2327.151 kb on - strandat 2327.151 kb on - strandat 2327.151 kb on - strandat 2327.151 kb on - strandat 2327.356 kb on - strandat 2327.440 kb on - strand, within ABZR86_RS10460at 2327.440 kb on - strand, within ABZR86_RS10460at 2327.503 kb on + strand, within ABZR86_RS10460at 2327.503 kb on + strand, within ABZR86_RS10460at 2327.503 kb on + strand, within ABZR86_RS10460at 2327.504 kb on - strand, within ABZR86_RS10460at 2327.504 kb on - strand, within ABZR86_RS10460

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,324,917 + ABZR86_RS10440 0.65 +0.3
2,324,917 + ABZR86_RS10440 0.65 +0.7
2,325,016 + ABZR86_RS10440 0.88 +0.0
2,325,017 - ABZR86_RS10440 0.88 -0.2
2,325,748 + -0.5
2,325,748 + -0.4
2,325,748 + -0.1
2,325,748 + +0.9
2,325,748 + +0.9
2,325,748 + -0.7
2,325,791 + +0.5
2,325,792 - -0.2
2,325,825 - ABZR86_RS10450 0.11 -0.0
2,325,825 - ABZR86_RS10450 0.11 +0.3
2,325,941 + ABZR86_RS10450 0.25 -0.0
2,325,941 + ABZR86_RS10450 0.25 +0.0
2,325,942 - ABZR86_RS10450 0.25 +0.5
2,325,945 - ABZR86_RS10450 0.25 +0.2
2,325,945 - ABZR86_RS10450 0.25 +0.3
2,326,088 + ABZR86_RS10450 0.43 +0.7
2,326,089 - ABZR86_RS10450 0.43 -0.3
2,326,636 - ABZR86_RS10455 0.11 +0.9
2,326,680 + ABZR86_RS10455 0.25 -0.3
2,326,776 + ABZR86_RS10455 0.55 -0.2
2,326,776 + ABZR86_RS10455 0.55 -0.7
2,326,777 - ABZR86_RS10455 0.55 +0.3
2,326,777 - ABZR86_RS10455 0.55 -0.5
2,326,777 - ABZR86_RS10455 0.55 +1.2
2,326,786 + ABZR86_RS10455 0.58 -0.3
2,326,786 + ABZR86_RS10455 0.58 -0.1
2,326,964 + -0.4
2,326,964 + +2.2
2,326,965 - -0.1
2,327,071 + +0.4
2,327,101 - -0.7
2,327,116 + +0.8
2,327,117 - -0.1
2,327,139 - +0.4
2,327,148 + -0.8
2,327,148 + -0.4
2,327,149 - +0.4
2,327,150 + +0.7
2,327,150 + +0.4
2,327,150 + +0.8
2,327,150 + +0.2
2,327,150 + +0.5
2,327,150 + -0.7
2,327,151 - +0.6
2,327,151 - +0.2
2,327,151 - +0.9
2,327,151 - -0.7
2,327,151 - +0.3
2,327,356 - +1.1
2,327,440 - ABZR86_RS10460 0.20 -0.5
2,327,440 - ABZR86_RS10460 0.20 -0.4
2,327,503 + ABZR86_RS10460 0.29 -0.1
2,327,503 + ABZR86_RS10460 0.29 +0.5
2,327,503 + ABZR86_RS10460 0.29 +0.8
2,327,504 - ABZR86_RS10460 0.29 -0.2
2,327,504 - ABZR86_RS10460 0.29 -1.1

Or see this region's nucleotide sequence