Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08880

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08870 and ABZR86_RS08875 are separated by 303 nucleotidesABZR86_RS08875 and ABZR86_RS08880 are separated by 165 nucleotidesABZR86_RS08880 and ABZR86_RS08885 are separated by 7 nucleotidesABZR86_RS08885 and ABZR86_RS08890 are separated by 34 nucleotides ABZR86_RS08870: ABZR86_RS08870 - 30S ribosomal protein S6, at 1,981,370 to 1,981,810 _RS08870 ABZR86_RS08875: ABZR86_RS08875 - iron-sulfur cluster assembly accessory protein, at 1,982,114 to 1,982,440 _RS08875 ABZR86_RS08880: ABZR86_RS08880 - asparagine--tRNA ligase, at 1,982,606 to 1,984,006 _RS08880 ABZR86_RS08885: ABZR86_RS08885 - MalM family protein, at 1,984,014 to 1,984,892 _RS08885 ABZR86_RS08890: ABZR86_RS08890 - hypothetical protein, at 1,984,927 to 1,985,247 _RS08890 Position (kb) 1982 1983 1984 1985Strain fitness (log2 ratio) -3 -2 -1 0 1at 1981.924 kb on - strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.112 kb on + strandat 1982.113 kb on - strandat 1982.113 kb on - strandat 1982.440 kb on + strandat 1982.440 kb on + strandat 1982.440 kb on + strandat 1982.495 kb on + strandat 1982.495 kb on + strandat 1982.495 kb on + strandat 1982.496 kb on - strandat 1982.496 kb on - strandat 1982.500 kb on + strandat 1982.500 kb on + strandat 1982.500 kb on + strandat 1982.500 kb on + strandat 1982.500 kb on + strandat 1982.500 kb on + strandat 1982.500 kb on + strandat 1982.501 kb on - strandat 1982.501 kb on - strandat 1982.501 kb on - strandat 1982.501 kb on - strandat 1982.501 kb on - strandat 1982.501 kb on - strandat 1982.556 kb on + strandat 1982.557 kb on - strandat 1982.557 kb on - strandat 1982.557 kb on - strandat 1982.557 kb on - strandat 1982.558 kb on + strandat 1982.558 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1984.191 kb on + strand, within ABZR86_RS08885at 1984.191 kb on + strand, within ABZR86_RS08885at 1984.191 kb on + strand, within ABZR86_RS08885at 1984.191 kb on + strand, within ABZR86_RS08885at 1984.192 kb on - strand, within ABZR86_RS08885at 1984.206 kb on + strand, within ABZR86_RS08885at 1984.290 kb on + strand, within ABZR86_RS08885at 1984.290 kb on + strand, within ABZR86_RS08885at 1984.291 kb on - strand, within ABZR86_RS08885at 1984.291 kb on - strand, within ABZR86_RS08885at 1984.291 kb on - strand, within ABZR86_RS08885at 1984.291 kb on - strand, within ABZR86_RS08885at 1984.383 kb on + strand, within ABZR86_RS08885at 1984.383 kb on + strand, within ABZR86_RS08885at 1984.383 kb on + strand, within ABZR86_RS08885at 1984.383 kb on + strand, within ABZR86_RS08885at 1984.384 kb on - strand, within ABZR86_RS08885at 1984.384 kb on - strand, within ABZR86_RS08885at 1984.384 kb on - strand, within ABZR86_RS08885at 1984.384 kb on - strand, within ABZR86_RS08885at 1984.384 kb on - strand, within ABZR86_RS08885at 1984.542 kb on + strand, within ABZR86_RS08885at 1984.542 kb on + strand, within ABZR86_RS08885at 1984.542 kb on + strand, within ABZR86_RS08885at 1984.543 kb on - strand, within ABZR86_RS08885at 1984.543 kb on - strand, within ABZR86_RS08885at 1984.543 kb on - strand, within ABZR86_RS08885at 1984.543 kb on - strand, within ABZR86_RS08885at 1984.575 kb on + strand, within ABZR86_RS08885at 1984.576 kb on - strand, within ABZR86_RS08885at 1984.576 kb on - strand, within ABZR86_RS08885at 1984.576 kb on - strand, within ABZR86_RS08885at 1984.576 kb on - strand, within ABZR86_RS08885at 1984.576 kb on - strand, within ABZR86_RS08885at 1984.576 kb on - strand, within ABZR86_RS08885at 1984.832 kb on + strandat 1984.833 kb on - strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.933 kb on - strandat 1984.939 kb on + strandat 1984.939 kb on + strandat 1984.939 kb on + strandat 1984.940 kb on - strandat 1984.940 kb on - strandat 1984.940 kb on - strandat 1984.940 kb on - strandat 1984.940 kb on - strandat 1984.940 kb on - strandat 1984.940 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,981,924 - +0.4
1,982,110 + -1.2
1,982,110 + +0.3
1,982,110 + +0.2
1,982,110 + -0.4
1,982,110 + -0.2
1,982,110 + +0.6
1,982,110 + -0.3
1,982,110 + -0.5
1,982,110 + -0.2
1,982,112 + -0.5
1,982,113 - +1.4
1,982,113 - -1.5
1,982,440 + -0.6
1,982,440 + -0.2
1,982,440 + -0.1
1,982,495 + -0.5
1,982,495 + -0.2
1,982,495 + +0.4
1,982,496 - +0.4
1,982,496 - -0.4
1,982,500 + +0.2
1,982,500 + -0.0
1,982,500 + -0.6
1,982,500 + +0.4
1,982,500 + +0.3
1,982,500 + -0.6
1,982,500 + +0.3
1,982,501 - -0.5
1,982,501 - -0.5
1,982,501 - +0.1
1,982,501 - -0.5
1,982,501 - +0.1
1,982,501 - +0.2
1,982,556 + +0.5
1,982,557 - +0.3
1,982,557 - +0.5
1,982,557 - +0.8
1,982,557 - -0.4
1,982,558 + -0.9
1,982,558 + +0.1
1,982,565 + -0.4
1,982,565 + +0.5
1,982,565 + -0.3
1,982,565 + -0.2
1,982,565 + +0.4
1,982,565 + -0.5
1,982,565 + -0.3
1,982,565 + +0.2
1,982,565 + +0.1
1,984,191 + ABZR86_RS08885 0.20 -0.2
1,984,191 + ABZR86_RS08885 0.20 +0.6
1,984,191 + ABZR86_RS08885 0.20 +0.6
1,984,191 + ABZR86_RS08885 0.20 -0.3
1,984,192 - ABZR86_RS08885 0.20 -0.5
1,984,206 + ABZR86_RS08885 0.22 +0.3
1,984,290 + ABZR86_RS08885 0.31 -0.4
1,984,290 + ABZR86_RS08885 0.31 -0.1
1,984,291 - ABZR86_RS08885 0.32 +0.1
1,984,291 - ABZR86_RS08885 0.32 -1.5
1,984,291 - ABZR86_RS08885 0.32 +0.5
1,984,291 - ABZR86_RS08885 0.32 -1.0
1,984,383 + ABZR86_RS08885 0.42 +0.6
1,984,383 + ABZR86_RS08885 0.42 -0.1
1,984,383 + ABZR86_RS08885 0.42 +0.6
1,984,383 + ABZR86_RS08885 0.42 +0.5
1,984,384 - ABZR86_RS08885 0.42 -0.4
1,984,384 - ABZR86_RS08885 0.42 -1.0
1,984,384 - ABZR86_RS08885 0.42 -0.5
1,984,384 - ABZR86_RS08885 0.42 -0.4
1,984,384 - ABZR86_RS08885 0.42 +0.1
1,984,542 + ABZR86_RS08885 0.60 -0.2
1,984,542 + ABZR86_RS08885 0.60 +0.7
1,984,542 + ABZR86_RS08885 0.60 -0.6
1,984,543 - ABZR86_RS08885 0.60 -0.4
1,984,543 - ABZR86_RS08885 0.60 -0.3
1,984,543 - ABZR86_RS08885 0.60 +0.2
1,984,543 - ABZR86_RS08885 0.60 -0.9
1,984,575 + ABZR86_RS08885 0.64 +0.1
1,984,576 - ABZR86_RS08885 0.64 +0.2
1,984,576 - ABZR86_RS08885 0.64 -0.2
1,984,576 - ABZR86_RS08885 0.64 +1.0
1,984,576 - ABZR86_RS08885 0.64 -0.1
1,984,576 - ABZR86_RS08885 0.64 -2.8
1,984,576 - ABZR86_RS08885 0.64 -0.1
1,984,832 + +0.2
1,984,833 - +0.8
1,984,932 + +0.1
1,984,932 + -0.1
1,984,932 + +1.2
1,984,932 + -0.7
1,984,932 + +0.3
1,984,932 + +0.2
1,984,932 + +0.6
1,984,932 + -0.7
1,984,933 - +0.1
1,984,939 + -0.4
1,984,939 + -1.2
1,984,939 + +0.6
1,984,940 - +0.0
1,984,940 - -0.1
1,984,940 - +0.2
1,984,940 - -0.2
1,984,940 - -1.9
1,984,940 - +0.1
1,984,940 - -0.8

Or see this region's nucleotide sequence