Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08770

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS08765 and ABZR86_RS08770 are separated by 102 nucleotidesABZR86_RS08770 and ABZR86_RS08775 overlap by 4 nucleotidesABZR86_RS08775 and ABZR86_RS08780 overlap by 4 nucleotides ABZR86_RS08765: ABZR86_RS08765 - GTP cyclohydrolase FolE2, at 1,961,864 to 1,962,817 _RS08765 ABZR86_RS08770: ABZR86_RS08770 - squalene/phytoene synthase family protein, at 1,962,920 to 1,963,771 _RS08770 ABZR86_RS08775: ABZR86_RS08775 - HAD-IA family hydrolase, at 1,963,768 to 1,964,448 _RS08775 ABZR86_RS08780: ABZR86_RS08780 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 1,964,445 to 1,965,152 _RS08780 Position (kb) 1962 1963 1964Strain fitness (log2 ratio) -2 -1 0 1 2at 1962.273 kb on - strand, within ABZR86_RS08765at 1962.348 kb on + strand, within ABZR86_RS08765at 1962.349 kb on - strand, within ABZR86_RS08765at 1962.366 kb on + strand, within ABZR86_RS08765at 1962.367 kb on - strand, within ABZR86_RS08765at 1962.389 kb on + strand, within ABZR86_RS08765at 1962.389 kb on + strand, within ABZR86_RS08765at 1962.390 kb on - strand, within ABZR86_RS08765at 1962.390 kb on - strand, within ABZR86_RS08765at 1962.390 kb on - strand, within ABZR86_RS08765at 1962.597 kb on + strand, within ABZR86_RS08765at 1962.597 kb on + strand, within ABZR86_RS08765at 1962.597 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.610 kb on + strand, within ABZR86_RS08765at 1962.611 kb on - strand, within ABZR86_RS08765at 1962.611 kb on - strand, within ABZR86_RS08765at 1962.611 kb on - strand, within ABZR86_RS08765at 1962.611 kb on - strand, within ABZR86_RS08765at 1962.611 kb on - strand, within ABZR86_RS08765at 1962.611 kb on - strand, within ABZR86_RS08765at 1962.611 kb on - strand, within ABZR86_RS08765at 1962.611 kb on - strand, within ABZR86_RS08765at 1962.611 kb on - strand, within ABZR86_RS08765at 1962.611 kb on - strand, within ABZR86_RS08765at 1962.611 kb on - strand, within ABZR86_RS08765at 1962.811 kb on + strandat 1962.812 kb on - strandat 1962.812 kb on - strandat 1962.813 kb on + strandat 1962.813 kb on + strandat 1962.813 kb on + strandat 1962.813 kb on + strandat 1962.813 kb on + strandat 1962.813 kb on + strandat 1962.813 kb on + strandat 1962.813 kb on + strandat 1962.813 kb on + strandat 1962.813 kb on + strandat 1962.813 kb on + strandat 1962.813 kb on + strandat 1962.814 kb on - strandat 1962.814 kb on - strandat 1962.814 kb on - strandat 1962.814 kb on - strandat 1962.814 kb on - strandat 1962.814 kb on - strandat 1962.814 kb on - strandat 1962.814 kb on - strandat 1962.814 kb on - strandat 1962.814 kb on - strandat 1962.814 kb on - strandat 1962.814 kb on - strandat 1962.866 kb on - strandat 1962.894 kb on + strandat 1962.894 kb on + strandat 1962.895 kb on - strandat 1962.895 kb on - strandat 1963.735 kb on - strandat 1963.893 kb on - strand, within ABZR86_RS08775at 1964.205 kb on - strand, within ABZR86_RS08775at 1964.205 kb on - strand, within ABZR86_RS08775at 1964.217 kb on - strand, within ABZR86_RS08775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
1,962,273 - ABZR86_RS08765 0.43 -0.4
1,962,348 + ABZR86_RS08765 0.51 -1.3
1,962,349 - ABZR86_RS08765 0.51 -1.2
1,962,366 + ABZR86_RS08765 0.53 +0.1
1,962,367 - ABZR86_RS08765 0.53 +0.2
1,962,389 + ABZR86_RS08765 0.55 -0.1
1,962,389 + ABZR86_RS08765 0.55 +1.7
1,962,390 - ABZR86_RS08765 0.55 +0.8
1,962,390 - ABZR86_RS08765 0.55 -0.1
1,962,390 - ABZR86_RS08765 0.55 +0.3
1,962,597 + ABZR86_RS08765 0.77 +0.4
1,962,597 + ABZR86_RS08765 0.77 -0.4
1,962,597 + ABZR86_RS08765 0.77 -0.1
1,962,610 + ABZR86_RS08765 0.78 -0.4
1,962,610 + ABZR86_RS08765 0.78 -0.9
1,962,610 + ABZR86_RS08765 0.78 -0.1
1,962,610 + ABZR86_RS08765 0.78 +0.2
1,962,610 + ABZR86_RS08765 0.78 -0.3
1,962,610 + ABZR86_RS08765 0.78 -0.2
1,962,610 + ABZR86_RS08765 0.78 -0.1
1,962,610 + ABZR86_RS08765 0.78 -0.5
1,962,610 + ABZR86_RS08765 0.78 +1.2
1,962,610 + ABZR86_RS08765 0.78 -0.8
1,962,610 + ABZR86_RS08765 0.78 +0.0
1,962,610 + ABZR86_RS08765 0.78 -1.7
1,962,610 + ABZR86_RS08765 0.78 -0.9
1,962,611 - ABZR86_RS08765 0.78 -1.3
1,962,611 - ABZR86_RS08765 0.78 +1.0
1,962,611 - ABZR86_RS08765 0.78 +0.8
1,962,611 - ABZR86_RS08765 0.78 +0.5
1,962,611 - ABZR86_RS08765 0.78 -0.5
1,962,611 - ABZR86_RS08765 0.78 +1.7
1,962,611 - ABZR86_RS08765 0.78 +0.2
1,962,611 - ABZR86_RS08765 0.78 -0.6
1,962,611 - ABZR86_RS08765 0.78 -1.3
1,962,611 - ABZR86_RS08765 0.78 -0.4
1,962,611 - ABZR86_RS08765 0.78 +1.1
1,962,811 + -0.5
1,962,812 - +0.7
1,962,812 - -0.3
1,962,813 + -0.8
1,962,813 + -0.0
1,962,813 + -0.9
1,962,813 + -0.3
1,962,813 + +0.2
1,962,813 + +0.2
1,962,813 + -0.3
1,962,813 + +0.5
1,962,813 + +0.3
1,962,813 + +0.7
1,962,813 + +0.4
1,962,813 + +0.5
1,962,814 - -1.2
1,962,814 - -0.5
1,962,814 - +1.0
1,962,814 - -1.0
1,962,814 - +0.0
1,962,814 - -0.2
1,962,814 - -1.8
1,962,814 - +0.7
1,962,814 - -0.7
1,962,814 - +0.5
1,962,814 - -0.8
1,962,814 - +1.1
1,962,866 - +0.1
1,962,894 + +0.4
1,962,894 + +2.4
1,962,895 - +0.1
1,962,895 - +0.5
1,963,735 - +0.3
1,963,893 - ABZR86_RS08775 0.18 -1.2
1,964,205 - ABZR86_RS08775 0.64 -1.0
1,964,205 - ABZR86_RS08775 0.64 -1.6
1,964,217 - ABZR86_RS08775 0.66 -0.4

Or see this region's nucleotide sequence