Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05080

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS05070 and ABZR86_RS05075 are separated by 5 nucleotidesABZR86_RS05075 and ABZR86_RS05080 are separated by 6 nucleotidesABZR86_RS05080 and ABZR86_RS05085 are separated by 323 nucleotidesABZR86_RS05085 and ABZR86_RS05090 overlap by 1 nucleotides ABZR86_RS05070: ABZR86_RS05070 - DUF4880 domain-containing protein, at 1,144,972 to 1,145,943 _RS05070 ABZR86_RS05075: ABZR86_RS05075 - RNA polymerase sigma factor, at 1,145,949 to 1,146,494 _RS05075 ABZR86_RS05080: ABZR86_RS05080 - STN domain-containing protein, at 1,146,501 to 1,147,106 _RS05080 ABZR86_RS05085: ABZR86_RS05085 - hypothetical protein, at 1,147,430 to 1,147,945 _RS05085 ABZR86_RS05090: ABZR86_RS05090 - RHS repeat-associated core domain-containing protein, at 1,147,945 to 1,153,323 _RS05090 Position (kb) 1146 1147 1148Strain fitness (log2 ratio) -1 0 1 2at 1145.520 kb on + strand, within ABZR86_RS05070at 1145.521 kb on - strand, within ABZR86_RS05070at 1145.521 kb on - strand, within ABZR86_RS05070at 1145.521 kb on - strand, within ABZR86_RS05070at 1145.944 kb on - strandat 1146.140 kb on + strand, within ABZR86_RS05075at 1146.140 kb on + strand, within ABZR86_RS05075at 1146.140 kb on + strand, within ABZR86_RS05075at 1146.140 kb on + strand, within ABZR86_RS05075at 1146.141 kb on - strand, within ABZR86_RS05075at 1146.224 kb on + strand, within ABZR86_RS05075at 1146.225 kb on - strand, within ABZR86_RS05075at 1146.260 kb on - strand, within ABZR86_RS05075at 1146.317 kb on - strand, within ABZR86_RS05075at 1146.373 kb on + strand, within ABZR86_RS05075at 1146.373 kb on + strand, within ABZR86_RS05075at 1146.374 kb on - strand, within ABZR86_RS05075at 1146.387 kb on + strand, within ABZR86_RS05075at 1146.387 kb on + strand, within ABZR86_RS05075at 1146.387 kb on + strand, within ABZR86_RS05075at 1146.387 kb on + strand, within ABZR86_RS05075at 1146.388 kb on - strand, within ABZR86_RS05075at 1146.688 kb on - strand, within ABZR86_RS05080at 1146.776 kb on - strand, within ABZR86_RS05080at 1146.889 kb on + strand, within ABZR86_RS05080at 1146.889 kb on + strand, within ABZR86_RS05080at 1146.889 kb on + strand, within ABZR86_RS05080at 1146.889 kb on + strand, within ABZR86_RS05080at 1147.180 kb on + strandat 1147.187 kb on + strandat 1147.188 kb on - strandat 1147.188 kb on - strandat 1147.239 kb on + strandat 1147.239 kb on + strandat 1147.239 kb on + strandat 1147.240 kb on - strandat 1147.240 kb on - strandat 1147.241 kb on + strandat 1147.241 kb on + strandat 1147.242 kb on - strandat 1147.242 kb on - strandat 1147.242 kb on - strandat 1147.291 kb on - strandat 1147.291 kb on - strandat 1147.295 kb on - strandat 1147.295 kb on - strandat 1147.323 kb on + strandat 1147.352 kb on + strandat 1147.427 kb on + strandat 1147.431 kb on + strandat 1147.432 kb on - strandat 1147.529 kb on - strand, within ABZR86_RS05085at 1147.554 kb on + strand, within ABZR86_RS05085at 1147.594 kb on + strand, within ABZR86_RS05085at 1147.628 kb on - strand, within ABZR86_RS05085at 1147.682 kb on + strand, within ABZR86_RS05085at 1147.718 kb on + strand, within ABZR86_RS05085at 1147.719 kb on - strand, within ABZR86_RS05085at 1147.808 kb on + strand, within ABZR86_RS05085at 1147.808 kb on + strand, within ABZR86_RS05085at 1147.808 kb on + strand, within ABZR86_RS05085at 1147.808 kb on + strand, within ABZR86_RS05085at 1147.808 kb on + strand, within ABZR86_RS05085at 1147.808 kb on + strand, within ABZR86_RS05085at 1147.808 kb on + strand, within ABZR86_RS05085at 1147.808 kb on + strand, within ABZR86_RS05085at 1147.809 kb on - strand, within ABZR86_RS05085at 1147.809 kb on - strand, within ABZR86_RS05085at 1147.809 kb on - strand, within ABZR86_RS05085at 1147.809 kb on - strand, within ABZR86_RS05085at 1147.809 kb on - strand, within ABZR86_RS05085at 1147.904 kb on - strandat 1147.919 kb on + strandat 1147.920 kb on - strandat 1148.019 kb on + strandat 1148.049 kb on + strandat 1148.049 kb on + strandat 1148.049 kb on + strandat 1148.088 kb on - strandat 1148.088 kb on - strandat 1148.093 kb on + strandat 1148.093 kb on + strandat 1148.093 kb on + strandat 1148.093 kb on + strandat 1148.093 kb on + strandat 1148.094 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
1,145,520 + ABZR86_RS05070 0.56 -0.4
1,145,521 - ABZR86_RS05070 0.56 -0.6
1,145,521 - ABZR86_RS05070 0.56 +0.4
1,145,521 - ABZR86_RS05070 0.56 -0.2
1,145,944 - -0.4
1,146,140 + ABZR86_RS05075 0.35 -1.2
1,146,140 + ABZR86_RS05075 0.35 +0.3
1,146,140 + ABZR86_RS05075 0.35 +1.3
1,146,140 + ABZR86_RS05075 0.35 -0.3
1,146,141 - ABZR86_RS05075 0.35 -0.2
1,146,224 + ABZR86_RS05075 0.50 +0.2
1,146,225 - ABZR86_RS05075 0.51 -0.3
1,146,260 - ABZR86_RS05075 0.57 +0.2
1,146,317 - ABZR86_RS05075 0.67 -0.1
1,146,373 + ABZR86_RS05075 0.78 +0.7
1,146,373 + ABZR86_RS05075 0.78 +1.8
1,146,374 - ABZR86_RS05075 0.78 -0.6
1,146,387 + ABZR86_RS05075 0.80 +1.1
1,146,387 + ABZR86_RS05075 0.80 +0.1
1,146,387 + ABZR86_RS05075 0.80 +0.2
1,146,387 + ABZR86_RS05075 0.80 -0.2
1,146,388 - ABZR86_RS05075 0.80 -0.0
1,146,688 - ABZR86_RS05080 0.31 +0.0
1,146,776 - ABZR86_RS05080 0.45 +0.3
1,146,889 + ABZR86_RS05080 0.64 +0.6
1,146,889 + ABZR86_RS05080 0.64 +0.4
1,146,889 + ABZR86_RS05080 0.64 -0.3
1,146,889 + ABZR86_RS05080 0.64 +0.5
1,147,180 + +1.0
1,147,187 + +0.6
1,147,188 - -0.0
1,147,188 - +0.3
1,147,239 + +0.3
1,147,239 + +0.3
1,147,239 + +0.9
1,147,240 - -1.3
1,147,240 - -0.2
1,147,241 + +0.7
1,147,241 + +0.4
1,147,242 - +0.1
1,147,242 - -1.5
1,147,242 - +0.7
1,147,291 - -0.1
1,147,291 - -0.5
1,147,295 - -0.8
1,147,295 - +0.0
1,147,323 + -0.9
1,147,352 + +0.6
1,147,427 + +0.2
1,147,431 + +0.4
1,147,432 - +0.7
1,147,529 - ABZR86_RS05085 0.19 -1.5
1,147,554 + ABZR86_RS05085 0.24 -0.1
1,147,594 + ABZR86_RS05085 0.32 -1.0
1,147,628 - ABZR86_RS05085 0.38 -0.3
1,147,682 + ABZR86_RS05085 0.49 -0.0
1,147,718 + ABZR86_RS05085 0.56 +0.4
1,147,719 - ABZR86_RS05085 0.56 +0.7
1,147,808 + ABZR86_RS05085 0.73 -1.2
1,147,808 + ABZR86_RS05085 0.73 -0.1
1,147,808 + ABZR86_RS05085 0.73 -0.5
1,147,808 + ABZR86_RS05085 0.73 +0.0
1,147,808 + ABZR86_RS05085 0.73 +0.3
1,147,808 + ABZR86_RS05085 0.73 +0.4
1,147,808 + ABZR86_RS05085 0.73 -0.0
1,147,808 + ABZR86_RS05085 0.73 +0.0
1,147,809 - ABZR86_RS05085 0.73 +1.1
1,147,809 - ABZR86_RS05085 0.73 +0.7
1,147,809 - ABZR86_RS05085 0.73 +0.7
1,147,809 - ABZR86_RS05085 0.73 -0.0
1,147,809 - ABZR86_RS05085 0.73 +0.3
1,147,904 - +0.2
1,147,919 + -0.3
1,147,920 - +0.2
1,148,019 + +0.7
1,148,049 + -0.3
1,148,049 + +1.7
1,148,049 + +0.7
1,148,088 - +0.2
1,148,088 - +0.8
1,148,093 + +0.3
1,148,093 + -0.4
1,148,093 + +0.0
1,148,093 + +1.1
1,148,093 + +0.3
1,148,094 - -0.1

Or see this region's nucleotide sequence