Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01115

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01105 and ABZR86_RS01110 are separated by 201 nucleotidesABZR86_RS01110 and ABZR86_RS01115 overlap by 23 nucleotidesABZR86_RS01115 and ABZR86_RS01120 are separated by 298 nucleotides ABZR86_RS01105: ABZR86_RS01105 - cytochrome b/b6 domain-containing protein, at 220,902 to 221,447 _RS01105 ABZR86_RS01110: ABZR86_RS01110 - hypothetical protein, at 221,649 to 222,344 _RS01110 ABZR86_RS01115: ABZR86_RS01115 - MASE1 domain-containing protein, at 222,322 to 223,872 _RS01115 ABZR86_RS01120: ABZR86_RS01120 - PD40 domain-containing protein, at 224,171 to 225,145 _RS01120 Position (kb) 222 223 224Strain fitness (log2 ratio) -2 -1 0 1at 221.492 kb on - strandat 221.492 kb on - strandat 221.620 kb on - strandat 221.799 kb on + strand, within ABZR86_RS01110at 221.799 kb on + strand, within ABZR86_RS01110at 221.800 kb on - strand, within ABZR86_RS01110at 221.800 kb on - strand, within ABZR86_RS01110at 221.922 kb on + strand, within ABZR86_RS01110at 221.922 kb on + strand, within ABZR86_RS01110at 221.923 kb on - strand, within ABZR86_RS01110at 221.923 kb on - strand, within ABZR86_RS01110at 221.982 kb on + strand, within ABZR86_RS01110at 221.983 kb on - strand, within ABZR86_RS01110at 221.983 kb on - strand, within ABZR86_RS01110at 221.983 kb on - strand, within ABZR86_RS01110at 222.033 kb on + strand, within ABZR86_RS01110at 222.033 kb on + strand, within ABZR86_RS01110at 222.034 kb on - strand, within ABZR86_RS01110at 222.034 kb on - strand, within ABZR86_RS01110at 222.034 kb on - strand, within ABZR86_RS01110at 222.034 kb on - strand, within ABZR86_RS01110at 222.596 kb on + strand, within ABZR86_RS01115at 222.596 kb on + strand, within ABZR86_RS01115at 222.597 kb on - strand, within ABZR86_RS01115at 222.597 kb on - strand, within ABZR86_RS01115at 222.597 kb on - strand, within ABZR86_RS01115at 222.597 kb on - strand, within ABZR86_RS01115at 222.597 kb on - strand, within ABZR86_RS01115at 222.639 kb on + strand, within ABZR86_RS01115at 222.639 kb on + strand, within ABZR86_RS01115at 222.640 kb on - strand, within ABZR86_RS01115at 222.640 kb on - strand, within ABZR86_RS01115at 222.821 kb on + strand, within ABZR86_RS01115at 222.821 kb on + strand, within ABZR86_RS01115at 222.822 kb on - strand, within ABZR86_RS01115at 222.822 kb on - strand, within ABZR86_RS01115at 222.822 kb on - strand, within ABZR86_RS01115at 222.822 kb on - strand, within ABZR86_RS01115at 222.905 kb on + strand, within ABZR86_RS01115at 222.905 kb on + strand, within ABZR86_RS01115at 222.905 kb on + strand, within ABZR86_RS01115at 222.905 kb on + strand, within ABZR86_RS01115at 222.906 kb on - strand, within ABZR86_RS01115at 222.906 kb on - strand, within ABZR86_RS01115at 222.906 kb on - strand, within ABZR86_RS01115at 223.178 kb on + strand, within ABZR86_RS01115at 223.178 kb on + strand, within ABZR86_RS01115at 223.397 kb on + strand, within ABZR86_RS01115at 223.397 kb on + strand, within ABZR86_RS01115at 223.397 kb on + strand, within ABZR86_RS01115at 223.397 kb on + strand, within ABZR86_RS01115at 223.397 kb on + strand, within ABZR86_RS01115at 223.397 kb on + strand, within ABZR86_RS01115at 223.398 kb on - strand, within ABZR86_RS01115at 223.398 kb on - strand, within ABZR86_RS01115at 223.398 kb on - strand, within ABZR86_RS01115at 223.398 kb on - strand, within ABZR86_RS01115at 223.398 kb on - strand, within ABZR86_RS01115at 223.398 kb on - strand, within ABZR86_RS01115at 223.398 kb on - strand, within ABZR86_RS01115at 223.413 kb on - strand, within ABZR86_RS01115at 223.637 kb on + strand, within ABZR86_RS01115at 223.637 kb on + strand, within ABZR86_RS01115at 223.638 kb on - strand, within ABZR86_RS01115at 223.671 kb on - strand, within ABZR86_RS01115at 223.671 kb on - strand, within ABZR86_RS01115at 223.721 kb on + strandat 223.808 kb on + strandat 223.808 kb on + strandat 223.808 kb on + strandat 223.809 kb on - strandat 223.809 kb on - strandat 223.820 kb on + strandat 223.820 kb on + strandat 223.820 kb on + strandat 223.820 kb on + strandat 223.821 kb on - strandat 223.821 kb on - strandat 223.821 kb on - strandat 223.850 kb on - strandat 223.912 kb on + strandat 223.974 kb on + strandat 223.975 kb on - strandat 223.975 kb on - strandat 223.975 kb on - strandat 223.976 kb on + strandat 223.976 kb on + strandat 223.976 kb on + strandat 223.976 kb on + strandat 223.976 kb on + strandat 223.976 kb on + strandat 223.977 kb on - strandat 223.977 kb on - strandat 223.977 kb on - strandat 223.977 kb on - strandat 223.977 kb on - strandat 223.977 kb on - strandat 223.977 kb on - strandat 223.977 kb on - strandat 223.977 kb on - strandat 223.977 kb on - strandat 223.977 kb on - strandat 224.044 kb on + strandat 224.045 kb on - strandat 224.045 kb on - strandat 224.324 kb on + strand, within ABZR86_RS01120at 224.324 kb on + strand, within ABZR86_RS01120at 224.324 kb on + strand, within ABZR86_RS01120at 224.325 kb on - strand, within ABZR86_RS01120at 224.325 kb on - strand, within ABZR86_RS01120at 224.325 kb on - strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.328 kb on + strand, within ABZR86_RS01120at 224.329 kb on - strand, within ABZR86_RS01120at 224.329 kb on - strand, within ABZR86_RS01120at 224.329 kb on - strand, within ABZR86_RS01120at 224.329 kb on - strand, within ABZR86_RS01120at 224.329 kb on - strand, within ABZR86_RS01120at 224.329 kb on - strand, within ABZR86_RS01120at 224.329 kb on - strand, within ABZR86_RS01120at 224.329 kb on - strand, within ABZR86_RS01120at 224.329 kb on - strand, within ABZR86_RS01120at 224.329 kb on - strand, within ABZR86_RS01120at 224.444 kb on - strand, within ABZR86_RS01120at 224.444 kb on - strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.445 kb on + strand, within ABZR86_RS01120at 224.446 kb on - strand, within ABZR86_RS01120at 224.446 kb on - strand, within ABZR86_RS01120at 224.446 kb on - strand, within ABZR86_RS01120at 224.446 kb on - strand, within ABZR86_RS01120at 224.446 kb on - strand, within ABZR86_RS01120at 224.446 kb on - strand, within ABZR86_RS01120at 224.446 kb on - strand, within ABZR86_RS01120at 224.446 kb on - strand, within ABZR86_RS01120at 224.446 kb on - strand, within ABZR86_RS01120at 224.446 kb on - strand, within ABZR86_RS01120at 224.574 kb on + strand, within ABZR86_RS01120at 224.601 kb on + strand, within ABZR86_RS01120at 224.601 kb on + strand, within ABZR86_RS01120at 224.601 kb on + strand, within ABZR86_RS01120at 224.602 kb on - strand, within ABZR86_RS01120at 224.602 kb on - strand, within ABZR86_RS01120at 224.602 kb on - strand, within ABZR86_RS01120at 224.602 kb on - strand, within ABZR86_RS01120at 224.602 kb on - strand, within ABZR86_RS01120at 224.610 kb on + strand, within ABZR86_RS01120at 224.610 kb on + strand, within ABZR86_RS01120at 224.610 kb on + strand, within ABZR86_RS01120at 224.611 kb on - strand, within ABZR86_RS01120at 224.646 kb on + strand, within ABZR86_RS01120at 224.646 kb on + strand, within ABZR86_RS01120at 224.646 kb on + strand, within ABZR86_RS01120at 224.646 kb on + strand, within ABZR86_RS01120at 224.647 kb on - strand, within ABZR86_RS01120at 224.647 kb on - strand, within ABZR86_RS01120at 224.647 kb on - strand, within ABZR86_RS01120at 224.647 kb on - strand, within ABZR86_RS01120at 224.679 kb on + strand, within ABZR86_RS01120at 224.679 kb on + strand, within ABZR86_RS01120at 224.679 kb on + strand, within ABZR86_RS01120at 224.680 kb on - strand, within ABZR86_RS01120at 224.680 kb on - strand, within ABZR86_RS01120at 224.680 kb on - strand, within ABZR86_RS01120at 224.680 kb on - strand, within ABZR86_RS01120at 224.758 kb on - strand, within ABZR86_RS01120at 224.758 kb on - strand, within ABZR86_RS01120at 224.847 kb on + strand, within ABZR86_RS01120at 224.847 kb on + strand, within ABZR86_RS01120at 224.847 kb on + strand, within ABZR86_RS01120

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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221,492 - +1.4
221,492 - +0.4
221,620 - +0.2
221,799 + ABZR86_RS01110 0.22 +0.8
221,799 + ABZR86_RS01110 0.22 -0.5
221,800 - ABZR86_RS01110 0.22 +0.6
221,800 - ABZR86_RS01110 0.22 -0.4
221,922 + ABZR86_RS01110 0.39 +0.3
221,922 + ABZR86_RS01110 0.39 +0.4
221,923 - ABZR86_RS01110 0.39 +0.9
221,923 - ABZR86_RS01110 0.39 +0.4
221,982 + ABZR86_RS01110 0.48 -0.1
221,983 - ABZR86_RS01110 0.48 -0.3
221,983 - ABZR86_RS01110 0.48 +0.4
221,983 - ABZR86_RS01110 0.48 +0.3
222,033 + ABZR86_RS01110 0.55 -0.3
222,033 + ABZR86_RS01110 0.55 +0.7
222,034 - ABZR86_RS01110 0.55 +1.0
222,034 - ABZR86_RS01110 0.55 +0.9
222,034 - ABZR86_RS01110 0.55 -0.2
222,034 - ABZR86_RS01110 0.55 -0.1
222,596 + ABZR86_RS01115 0.18 -1.2
222,596 + ABZR86_RS01115 0.18 +0.2
222,597 - ABZR86_RS01115 0.18 -1.1
222,597 - ABZR86_RS01115 0.18 -0.5
222,597 - ABZR86_RS01115 0.18 -0.4
222,597 - ABZR86_RS01115 0.18 -2.3
222,597 - ABZR86_RS01115 0.18 +0.4
222,639 + ABZR86_RS01115 0.20 -0.2
222,639 + ABZR86_RS01115 0.20 +0.1
222,640 - ABZR86_RS01115 0.21 -0.4
222,640 - ABZR86_RS01115 0.21 -0.3
222,821 + ABZR86_RS01115 0.32 -0.6
222,821 + ABZR86_RS01115 0.32 +0.5
222,822 - ABZR86_RS01115 0.32 -0.7
222,822 - ABZR86_RS01115 0.32 +0.1
222,822 - ABZR86_RS01115 0.32 -0.2
222,822 - ABZR86_RS01115 0.32 -0.7
222,905 + ABZR86_RS01115 0.38 +0.1
222,905 + ABZR86_RS01115 0.38 -0.0
222,905 + ABZR86_RS01115 0.38 -0.2
222,905 + ABZR86_RS01115 0.38 +1.0
222,906 - ABZR86_RS01115 0.38 -0.7
222,906 - ABZR86_RS01115 0.38 +0.5
222,906 - ABZR86_RS01115 0.38 -0.2
223,178 + ABZR86_RS01115 0.55 +1.4
223,178 + ABZR86_RS01115 0.55 -1.0
223,397 + ABZR86_RS01115 0.69 -0.2
223,397 + ABZR86_RS01115 0.69 -0.5
223,397 + ABZR86_RS01115 0.69 -1.2
223,397 + ABZR86_RS01115 0.69 -0.0
223,397 + ABZR86_RS01115 0.69 -0.4
223,397 + ABZR86_RS01115 0.69 -0.5
223,398 - ABZR86_RS01115 0.69 -0.3
223,398 - ABZR86_RS01115 0.69 -0.0
223,398 - ABZR86_RS01115 0.69 +0.1
223,398 - ABZR86_RS01115 0.69 +0.3
223,398 - ABZR86_RS01115 0.69 -0.7
223,398 - ABZR86_RS01115 0.69 -0.3
223,398 - ABZR86_RS01115 0.69 -0.1
223,413 - ABZR86_RS01115 0.70 -0.2
223,637 + ABZR86_RS01115 0.85 -0.4
223,637 + ABZR86_RS01115 0.85 +0.9
223,638 - ABZR86_RS01115 0.85 +0.1
223,671 - ABZR86_RS01115 0.87 -0.7
223,671 - ABZR86_RS01115 0.87 +0.3
223,721 + +1.4
223,808 + -1.7
223,808 + -0.3
223,808 + -0.7
223,809 - -0.3
223,809 - -0.4
223,820 + +0.1
223,820 + +0.4
223,820 + +1.2
223,820 + -0.3
223,821 - +0.1
223,821 - +0.4
223,821 - +0.8
223,850 - -0.1
223,912 + -0.9
223,974 + +1.1
223,975 - -0.2
223,975 - +0.2
223,975 - -2.6
223,976 + -1.3
223,976 + +1.2
223,976 + +0.1
223,976 + +0.1
223,976 + +0.1
223,976 + -0.2
223,977 - +0.3
223,977 - -0.9
223,977 - -0.6
223,977 - +0.1
223,977 - +0.6
223,977 - +0.7
223,977 - -1.3
223,977 - +0.2
223,977 - +0.6
223,977 - -0.3
223,977 - -0.4
224,044 + -0.3
224,045 - +0.4
224,045 - +0.3
224,324 + ABZR86_RS01120 0.16 -0.5
224,324 + ABZR86_RS01120 0.16 +0.0
224,324 + ABZR86_RS01120 0.16 -0.5
224,325 - ABZR86_RS01120 0.16 -1.1
224,325 - ABZR86_RS01120 0.16 +0.5
224,325 - ABZR86_RS01120 0.16 -0.6
224,328 + ABZR86_RS01120 0.16 -0.1
224,328 + ABZR86_RS01120 0.16 +0.2
224,328 + ABZR86_RS01120 0.16 -0.6
224,328 + ABZR86_RS01120 0.16 -0.5
224,328 + ABZR86_RS01120 0.16 -1.5
224,328 + ABZR86_RS01120 0.16 +0.3
224,328 + ABZR86_RS01120 0.16 -0.4
224,328 + ABZR86_RS01120 0.16 -0.1
224,328 + ABZR86_RS01120 0.16 -0.5
224,328 + ABZR86_RS01120 0.16 +0.2
224,328 + ABZR86_RS01120 0.16 -0.2
224,328 + ABZR86_RS01120 0.16 -1.0
224,328 + ABZR86_RS01120 0.16 -0.4
224,329 - ABZR86_RS01120 0.16 +0.5
224,329 - ABZR86_RS01120 0.16 -0.2
224,329 - ABZR86_RS01120 0.16 -0.2
224,329 - ABZR86_RS01120 0.16 +0.3
224,329 - ABZR86_RS01120 0.16 -0.4
224,329 - ABZR86_RS01120 0.16 -0.9
224,329 - ABZR86_RS01120 0.16 +0.4
224,329 - ABZR86_RS01120 0.16 -0.3
224,329 - ABZR86_RS01120 0.16 +0.3
224,329 - ABZR86_RS01120 0.16 +0.4
224,444 - ABZR86_RS01120 0.28 +0.2
224,444 - ABZR86_RS01120 0.28 -0.9
224,445 + ABZR86_RS01120 0.28 +0.4
224,445 + ABZR86_RS01120 0.28 -0.1
224,445 + ABZR86_RS01120 0.28 -0.5
224,445 + ABZR86_RS01120 0.28 +0.1
224,445 + ABZR86_RS01120 0.28 +0.3
224,445 + ABZR86_RS01120 0.28 +0.6
224,445 + ABZR86_RS01120 0.28 -0.2
224,445 + ABZR86_RS01120 0.28 -0.9
224,445 + ABZR86_RS01120 0.28 +1.3
224,445 + ABZR86_RS01120 0.28 +0.1
224,445 + ABZR86_RS01120 0.28 +0.2
224,445 + ABZR86_RS01120 0.28 -0.5
224,445 + ABZR86_RS01120 0.28 -0.7
224,446 - ABZR86_RS01120 0.28 -0.5
224,446 - ABZR86_RS01120 0.28 +0.3
224,446 - ABZR86_RS01120 0.28 -1.6
224,446 - ABZR86_RS01120 0.28 +0.7
224,446 - ABZR86_RS01120 0.28 +0.3
224,446 - ABZR86_RS01120 0.28 -0.1
224,446 - ABZR86_RS01120 0.28 -0.6
224,446 - ABZR86_RS01120 0.28 +0.4
224,446 - ABZR86_RS01120 0.28 -0.0
224,446 - ABZR86_RS01120 0.28 +0.5
224,574 + ABZR86_RS01120 0.41 +0.6
224,601 + ABZR86_RS01120 0.44 +0.6
224,601 + ABZR86_RS01120 0.44 -0.1
224,601 + ABZR86_RS01120 0.44 -0.3
224,602 - ABZR86_RS01120 0.44 +0.3
224,602 - ABZR86_RS01120 0.44 +0.2
224,602 - ABZR86_RS01120 0.44 +0.7
224,602 - ABZR86_RS01120 0.44 +0.3
224,602 - ABZR86_RS01120 0.44 -0.4
224,610 + ABZR86_RS01120 0.45 -0.3
224,610 + ABZR86_RS01120 0.45 +0.7
224,610 + ABZR86_RS01120 0.45 -0.4
224,611 - ABZR86_RS01120 0.45 -0.3
224,646 + ABZR86_RS01120 0.49 -0.8
224,646 + ABZR86_RS01120 0.49 -0.2
224,646 + ABZR86_RS01120 0.49 +0.2
224,646 + ABZR86_RS01120 0.49 +0.1
224,647 - ABZR86_RS01120 0.49 +0.1
224,647 - ABZR86_RS01120 0.49 -0.3
224,647 - ABZR86_RS01120 0.49 -0.6
224,647 - ABZR86_RS01120 0.49 -0.2
224,679 + ABZR86_RS01120 0.52 +1.0
224,679 + ABZR86_RS01120 0.52 +1.4
224,679 + ABZR86_RS01120 0.52 +0.0
224,680 - ABZR86_RS01120 0.52 +0.5
224,680 - ABZR86_RS01120 0.52 -0.4
224,680 - ABZR86_RS01120 0.52 +0.3
224,680 - ABZR86_RS01120 0.52 +0.3
224,758 - ABZR86_RS01120 0.60 +1.3
224,758 - ABZR86_RS01120 0.60 +0.1
224,847 + ABZR86_RS01120 0.69 -0.3
224,847 + ABZR86_RS01120 0.69 +0.0
224,847 + ABZR86_RS01120 0.69 +1.0

Or see this region's nucleotide sequence