Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2751

Experiment: MoYLS4 with Gentamicin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2750 and DvMF_2751 are separated by 314 nucleotidesDvMF_2751 and DvMF_2752 overlap by 4 nucleotidesDvMF_2752 and DvMF_2753 overlap by 4 nucleotides DvMF_2750: DvMF_2750 - Extracellular ligand-binding receptor (RefSeq), at 3,475,163 to 3,476,290 _2750 DvMF_2751: DvMF_2751 - inner-membrane translocator (RefSeq), at 3,476,605 to 3,477,510 _2751 DvMF_2752: DvMF_2752 - inner-membrane translocator (RefSeq), at 3,477,507 to 3,478,499 _2752 DvMF_2753: DvMF_2753 - ABC transporter related (RefSeq), at 3,478,496 to 3,479,263 _2753 Position (kb) 3476 3477 3478Strain fitness (log2 ratio) -1 0 1at 3475.752 kb on + strand, within DvMF_2750at 3475.760 kb on - strand, within DvMF_2750at 3475.760 kb on - strand, within DvMF_2750at 3475.779 kb on + strand, within DvMF_2750at 3475.832 kb on + strand, within DvMF_2750at 3475.989 kb on - strand, within DvMF_2750at 3476.052 kb on - strand, within DvMF_2750at 3476.056 kb on + strand, within DvMF_2750at 3476.078 kb on - strand, within DvMF_2750at 3476.166 kb on - strand, within DvMF_2750at 3476.293 kb on + strandat 3476.309 kb on - strandat 3476.416 kb on + strandat 3476.513 kb on + strandat 3476.529 kb on + strandat 3476.554 kb on - strandat 3476.591 kb on + strandat 3476.673 kb on + strandat 3476.673 kb on + strandat 3476.681 kb on - strandat 3476.681 kb on - strandat 3476.685 kb on + strandat 3476.693 kb on - strandat 3476.823 kb on + strand, within DvMF_2751at 3476.987 kb on - strand, within DvMF_2751at 3477.011 kb on + strand, within DvMF_2751at 3477.101 kb on + strand, within DvMF_2751at 3477.128 kb on + strand, within DvMF_2751at 3477.226 kb on - strand, within DvMF_2751at 3477.250 kb on - strand, within DvMF_2751at 3477.250 kb on - strand, within DvMF_2751at 3477.350 kb on + strand, within DvMF_2751at 3477.719 kb on + strand, within DvMF_2752at 3477.997 kb on - strand, within DvMF_2752at 3478.002 kb on - strand, within DvMF_2752at 3478.009 kb on + strand, within DvMF_2752at 3478.132 kb on - strand, within DvMF_2752at 3478.236 kb on - strand, within DvMF_2752at 3478.272 kb on - strand, within DvMF_2752at 3478.351 kb on + strand, within DvMF_2752at 3478.351 kb on + strand, within DvMF_2752

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml
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3,475,752 + DvMF_2750 0.52 +0.2
3,475,760 - DvMF_2750 0.53 +0.1
3,475,760 - DvMF_2750 0.53 -0.3
3,475,779 + DvMF_2750 0.55 +0.1
3,475,832 + DvMF_2750 0.59 +0.2
3,475,989 - DvMF_2750 0.73 +1.4
3,476,052 - DvMF_2750 0.79 +0.2
3,476,056 + DvMF_2750 0.79 +0.3
3,476,078 - DvMF_2750 0.81 -0.2
3,476,166 - DvMF_2750 0.89 -0.9
3,476,293 + +0.2
3,476,309 - -0.8
3,476,416 + +0.2
3,476,513 + -0.1
3,476,529 + -0.2
3,476,554 - -0.0
3,476,591 + -0.1
3,476,673 + +0.0
3,476,673 + +0.4
3,476,681 - -0.0
3,476,681 - -0.3
3,476,685 + +0.1
3,476,693 - +0.7
3,476,823 + DvMF_2751 0.24 -0.0
3,476,987 - DvMF_2751 0.42 -0.2
3,477,011 + DvMF_2751 0.45 -0.5
3,477,101 + DvMF_2751 0.55 +0.4
3,477,128 + DvMF_2751 0.58 -0.5
3,477,226 - DvMF_2751 0.69 +0.1
3,477,250 - DvMF_2751 0.71 +0.1
3,477,250 - DvMF_2751 0.71 -0.3
3,477,350 + DvMF_2751 0.82 -0.0
3,477,719 + DvMF_2752 0.21 -0.3
3,477,997 - DvMF_2752 0.49 -0.5
3,478,002 - DvMF_2752 0.50 -0.6
3,478,009 + DvMF_2752 0.51 +0.3
3,478,132 - DvMF_2752 0.63 -0.2
3,478,236 - DvMF_2752 0.73 +0.3
3,478,272 - DvMF_2752 0.77 +0.0
3,478,351 + DvMF_2752 0.85 -0.1
3,478,351 + DvMF_2752 0.85 -0.2

Or see this region's nucleotide sequence