Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2685

Experiment: MoYLS4 with Gentamicin 0.03 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2684 and DvMF_2685 are separated by 104 nucleotidesDvMF_2685 and DvMF_2686 are separated by 88 nucleotides DvMF_2684: DvMF_2684 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,395,988 to 3,397,061 _2684 DvMF_2685: DvMF_2685 - extracellular solute-binding protein family 3 (RefSeq), at 3,397,166 to 3,398,032 _2685 DvMF_2686: DvMF_2686 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,398,121 to 3,399,071 _2686 Position (kb) 3397 3398 3399Strain fitness (log2 ratio) -1 0 1at 3396.266 kb on + strand, within DvMF_2684at 3396.346 kb on + strand, within DvMF_2684at 3396.356 kb on + strand, within DvMF_2684at 3396.453 kb on + strand, within DvMF_2684at 3396.456 kb on - strand, within DvMF_2684at 3396.744 kb on + strand, within DvMF_2684at 3396.861 kb on - strand, within DvMF_2684at 3396.861 kb on - strand, within DvMF_2684at 3396.948 kb on + strand, within DvMF_2684at 3397.048 kb on + strandat 3397.459 kb on + strand, within DvMF_2685at 3397.571 kb on - strand, within DvMF_2685at 3397.697 kb on + strand, within DvMF_2685at 3397.710 kb on - strand, within DvMF_2685at 3398.254 kb on - strand, within DvMF_2686at 3398.284 kb on + strand, within DvMF_2686at 3398.399 kb on + strand, within DvMF_2686at 3398.407 kb on - strand, within DvMF_2686at 3398.407 kb on - strand, within DvMF_2686at 3398.429 kb on - strand, within DvMF_2686at 3398.496 kb on + strand, within DvMF_2686at 3398.689 kb on - strand, within DvMF_2686at 3398.802 kb on + strand, within DvMF_2686at 3398.831 kb on + strand, within DvMF_2686at 3398.839 kb on - strand, within DvMF_2686

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml
remove
3,396,266 + DvMF_2684 0.26 -0.1
3,396,346 + DvMF_2684 0.33 -0.8
3,396,356 + DvMF_2684 0.34 -0.5
3,396,453 + DvMF_2684 0.43 -0.5
3,396,456 - DvMF_2684 0.44 -0.3
3,396,744 + DvMF_2684 0.70 -1.1
3,396,861 - DvMF_2684 0.81 -0.4
3,396,861 - DvMF_2684 0.81 -0.6
3,396,948 + DvMF_2684 0.89 -1.0
3,397,048 + -0.6
3,397,459 + DvMF_2685 0.34 +0.7
3,397,571 - DvMF_2685 0.47 +0.0
3,397,697 + DvMF_2685 0.61 -0.2
3,397,710 - DvMF_2685 0.63 +0.0
3,398,254 - DvMF_2686 0.14 +0.2
3,398,284 + DvMF_2686 0.17 -1.2
3,398,399 + DvMF_2686 0.29 -0.4
3,398,407 - DvMF_2686 0.30 -0.2
3,398,407 - DvMF_2686 0.30 -0.2
3,398,429 - DvMF_2686 0.32 -0.2
3,398,496 + DvMF_2686 0.39 -0.0
3,398,689 - DvMF_2686 0.60 -0.7
3,398,802 + DvMF_2686 0.72 -0.6
3,398,831 + DvMF_2686 0.75 -0.2
3,398,839 - DvMF_2686 0.75 -0.3

Or see this region's nucleotide sequence