Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2243

Experiment: MoYLS4 with Gentamicin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2242 and DvMF_2243 are separated by 519 nucleotidesDvMF_2243 and DvMF_2244 are separated by 425 nucleotidesDvMF_2244 and DvMF_2245 are separated by 91 nucleotides DvMF_2242: DvMF_2242 - putative signal transduction protein (RefSeq), at 2,815,394 to 2,816,470 _2242 DvMF_2243: DvMF_2243 - AMP-dependent synthetase and ligase (RefSeq), at 2,816,990 to 2,818,678 _2243 DvMF_2244: DvMF_2244 - Stress responsive alpha-beta barrel domain protein (RefSeq), at 2,819,104 to 2,819,409 _2244 DvMF_2245: DvMF_2245 - Methyltransferase type 11 (RefSeq), at 2,819,501 to 2,820,139 _2245 Position (kb) 2816 2817 2818 2819Strain fitness (log2 ratio) -1 0 1at 2816.330 kb on - strand, within DvMF_2242at 2816.342 kb on + strand, within DvMF_2242at 2816.417 kb on + strandat 2816.527 kb on + strandat 2817.084 kb on + strandat 2817.091 kb on - strandat 2817.211 kb on + strand, within DvMF_2243at 2817.516 kb on - strand, within DvMF_2243at 2817.520 kb on + strand, within DvMF_2243at 2818.068 kb on + strand, within DvMF_2243at 2818.118 kb on + strand, within DvMF_2243at 2818.808 kb on + strandat 2818.816 kb on - strandat 2818.824 kb on + strandat 2818.994 kb on + strandat 2819.022 kb on + strandat 2819.228 kb on + strand, within DvMF_2244at 2819.228 kb on + strand, within DvMF_2244at 2819.243 kb on + strand, within DvMF_2244at 2819.319 kb on + strand, within DvMF_2244at 2819.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml
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2,816,330 - DvMF_2242 0.87 -0.4
2,816,342 + DvMF_2242 0.88 -0.6
2,816,417 + -1.1
2,816,527 + -0.5
2,817,084 + -0.3
2,817,091 - +1.0
2,817,211 + DvMF_2243 0.13 +0.4
2,817,516 - DvMF_2243 0.31 +0.2
2,817,520 + DvMF_2243 0.31 +1.2
2,818,068 + DvMF_2243 0.64 +0.6
2,818,118 + DvMF_2243 0.67 +1.2
2,818,808 + +0.5
2,818,816 - -0.1
2,818,824 + +0.3
2,818,994 + -0.4
2,819,022 + +1.2
2,819,228 + DvMF_2244 0.41 +0.2
2,819,228 + DvMF_2244 0.41 -0.1
2,819,243 + DvMF_2244 0.45 -0.2
2,819,319 + DvMF_2244 0.70 -0.1
2,819,412 - +0.6

Or see this region's nucleotide sequence