Experiment: MoYLS4 with Gentamicin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1919 and DvMF_1920 are separated by 12 nucleotides DvMF_1920 and DvMF_1921 are separated by 211 nucleotides DvMF_1921 and DvMF_1922 are separated by 134 nucleotides
DvMF_1919: DvMF_1919 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 2,365,465 to 2,366,136
_1919
DvMF_1920: DvMF_1920 - ABC transporter related (RefSeq), at 2,366,149 to 2,366,898
_1920
DvMF_1921: DvMF_1921 - A/G-specific adenine glycosylase (RefSeq), at 2,367,110 to 2,368,414
_1921
DvMF_1922: DvMF_1922 - hypothetical protein (RefSeq), at 2,368,549 to 2,371,248
_1922
Position (kb)
2367
2368
2369 Strain fitness (log2 ratio)
-1
0
1 at 2366.112 kb on + strand at 2366.225 kb on + strand, within DvMF_1920 at 2366.225 kb on + strand, within DvMF_1920 at 2366.233 kb on - strand, within DvMF_1920 at 2366.459 kb on + strand, within DvMF_1920 at 2366.872 kb on + strand at 2366.910 kb on - strand at 2367.046 kb on - strand at 2367.178 kb on + strand at 2367.348 kb on + strand, within DvMF_1921 at 2367.572 kb on - strand, within DvMF_1921 at 2367.956 kb on - strand, within DvMF_1921 at 2368.722 kb on - strand at 2368.843 kb on - strand, within DvMF_1922 at 2368.891 kb on + strand, within DvMF_1922 at 2369.275 kb on + strand, within DvMF_1922
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml remove 2,366,112 + +0.2 2,366,225 + DvMF_1920 0.10 +0.5 2,366,225 + DvMF_1920 0.10 +0.3 2,366,233 - DvMF_1920 0.11 -0.6 2,366,459 + DvMF_1920 0.41 +0.6 2,366,872 + +0.1 2,366,910 - -1.0 2,367,046 - -0.7 2,367,178 + -0.3 2,367,348 + DvMF_1921 0.18 +0.3 2,367,572 - DvMF_1921 0.35 -0.4 2,367,956 - DvMF_1921 0.65 -1.0 2,368,722 - +0.2 2,368,843 - DvMF_1922 0.11 -0.3 2,368,891 + DvMF_1922 0.13 -0.7 2,369,275 + DvMF_1922 0.27 +0.2
Or see this region's nucleotide sequence