Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1898

Experiment: MoYLS4 with Gentamicin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1897 and DvMF_1898 are separated by 292 nucleotidesDvMF_1898 and DvMF_1899 are separated by 214 nucleotides DvMF_1897: DvMF_1897 - polysaccharide biosynthesis protein (RefSeq), at 2,335,594 to 2,337,129 _1897 DvMF_1898: DvMF_1898 - HpcH/HpaI aldolase (RefSeq), at 2,337,422 to 2,338,201 _1898 DvMF_1899: DvMF_1899 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,338,416 to 2,339,330 _1899 Position (kb) 2337 2338 2339Strain fitness (log2 ratio) -1 0 1at 2337.087 kb on + strandat 2337.132 kb on - strandat 2337.201 kb on + strandat 2337.393 kb on + strandat 2338.658 kb on + strand, within DvMF_1899

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml
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2,337,087 + -0.3
2,337,132 - +0.2
2,337,201 + -0.3
2,337,393 + -0.5
2,338,658 + DvMF_1899 0.26 -1.1

Or see this region's nucleotide sequence