Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1886

Experiment: MoYLS4 with Gentamicin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1885 and DvMF_1886 are separated by 688 nucleotidesDvMF_1886 and DvMF_1887 are separated by 188 nucleotides DvMF_1885: DvMF_1885 - hypothetical protein (RefSeq), at 2,321,814 to 2,322,383 _1885 DvMF_1886: DvMF_1886 - HesB/YadR/YfhF-family protein (RefSeq), at 2,323,072 to 2,323,395 _1886 DvMF_1887: DvMF_1887 - glycosyl transferase family 2 (RefSeq), at 2,323,584 to 2,324,645 _1887 Position (kb) 2323 2324Strain fitness (log2 ratio) -1 0 1 2 3at 2322.093 kb on + strand, within DvMF_1885at 2322.184 kb on - strand, within DvMF_1885at 2322.227 kb on - strand, within DvMF_1885at 2322.534 kb on + strandat 2322.552 kb on - strandat 2322.685 kb on + strandat 2322.709 kb on + strandat 2322.713 kb on - strandat 2322.931 kb on - strandat 2323.152 kb on - strand, within DvMF_1886at 2323.184 kb on + strand, within DvMF_1886at 2323.292 kb on - strand, within DvMF_1886at 2323.591 kb on - strandat 2323.693 kb on + strand, within DvMF_1887at 2324.005 kb on + strand, within DvMF_1887at 2324.014 kb on - strand, within DvMF_1887at 2324.171 kb on + strand, within DvMF_1887at 2324.215 kb on + strand, within DvMF_1887

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml
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2,322,093 + DvMF_1885 0.49 -0.2
2,322,184 - DvMF_1885 0.65 -0.2
2,322,227 - DvMF_1885 0.72 -0.4
2,322,534 + -0.1
2,322,552 - +3.0
2,322,685 + -0.3
2,322,709 + +0.2
2,322,713 - -0.1
2,322,931 - -0.4
2,323,152 - DvMF_1886 0.25 +0.2
2,323,184 + DvMF_1886 0.35 +0.8
2,323,292 - DvMF_1886 0.68 -0.5
2,323,591 - -0.2
2,323,693 + DvMF_1887 0.10 -0.6
2,324,005 + DvMF_1887 0.40 -0.3
2,324,014 - DvMF_1887 0.40 -0.4
2,324,171 + DvMF_1887 0.55 -0.6
2,324,215 + DvMF_1887 0.59 +0.1

Or see this region's nucleotide sequence