Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1868

Experiment: MoYLS4 with Gentamicin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1866 and DvMF_1867 are separated by 136 nucleotidesDvMF_1867 and DvMF_1868 are separated by 4 nucleotidesDvMF_1868 and DvMF_1869 are separated by 235 nucleotides DvMF_1866: DvMF_1866 - DRTGG domain protein (RefSeq), at 2,290,169 to 2,291,230 _1866 DvMF_1867: DvMF_1867 - protein of unknown function DUF162 (RefSeq), at 2,291,367 to 2,291,996 _1867 DvMF_1868: DvMF_1868 - protein of unknown function DUF162 (RefSeq), at 2,292,001 to 2,294,151 _1868 DvMF_1869: DvMF_1869 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 2,294,387 to 2,296,210 _1869 Position (kb) 2292 2293 2294 2295Strain fitness (log2 ratio) -3 -2 -1 0 1at 2291.130 kb on + strandat 2291.138 kb on - strandat 2291.149 kb on + strandat 2291.369 kb on - strandat 2291.369 kb on - strandat 2291.537 kb on + strand, within DvMF_1867at 2291.544 kb on + strand, within DvMF_1867at 2291.563 kb on - strand, within DvMF_1867at 2291.950 kb on - strandat 2292.084 kb on - strandat 2292.213 kb on + strandat 2292.221 kb on - strand, within DvMF_1868at 2292.221 kb on - strand, within DvMF_1868at 2292.338 kb on - strand, within DvMF_1868at 2292.386 kb on + strand, within DvMF_1868at 2292.736 kb on + strand, within DvMF_1868at 2293.011 kb on - strand, within DvMF_1868at 2293.224 kb on - strand, within DvMF_1868at 2293.292 kb on + strand, within DvMF_1868at 2293.481 kb on - strand, within DvMF_1868at 2293.640 kb on + strand, within DvMF_1868at 2293.640 kb on + strand, within DvMF_1868at 2293.648 kb on - strand, within DvMF_1868at 2293.990 kb on + strandat 2293.997 kb on + strandat 2293.998 kb on - strandat 2294.291 kb on - strandat 2294.348 kb on + strandat 2294.788 kb on + strand, within DvMF_1869at 2294.928 kb on + strand, within DvMF_1869at 2295.004 kb on + strand, within DvMF_1869

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml
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2,291,130 + +0.2
2,291,138 - -0.9
2,291,149 + +0.4
2,291,369 - -2.9
2,291,369 - -0.4
2,291,537 + DvMF_1867 0.27 -0.9
2,291,544 + DvMF_1867 0.28 +0.2
2,291,563 - DvMF_1867 0.31 -0.2
2,291,950 - -1.3
2,292,084 - -1.4
2,292,213 + -0.3
2,292,221 - DvMF_1868 0.10 -1.4
2,292,221 - DvMF_1868 0.10 -1.5
2,292,338 - DvMF_1868 0.16 -1.2
2,292,386 + DvMF_1868 0.18 -0.6
2,292,736 + DvMF_1868 0.34 +0.7
2,293,011 - DvMF_1868 0.47 -1.2
2,293,224 - DvMF_1868 0.57 -1.5
2,293,292 + DvMF_1868 0.60 -0.0
2,293,481 - DvMF_1868 0.69 -0.8
2,293,640 + DvMF_1868 0.76 -0.5
2,293,640 + DvMF_1868 0.76 -0.2
2,293,648 - DvMF_1868 0.77 -1.4
2,293,990 + -0.9
2,293,997 + -0.6
2,293,998 - -1.1
2,294,291 - -0.5
2,294,348 + -0.4
2,294,788 + DvMF_1869 0.22 +0.5
2,294,928 + DvMF_1869 0.30 +0.0
2,295,004 + DvMF_1869 0.34 -0.4

Or see this region's nucleotide sequence