Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1542

Experiment: MoYLS4 with Gentamicin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1540 and DvMF_1541 are separated by 36 nucleotidesDvMF_1541 and DvMF_1542 are separated by 222 nucleotidesDvMF_1542 and DvMF_1543 are separated by 346 nucleotides DvMF_1540: DvMF_1540 - H(+)-transporting two-sector ATPase (RefSeq), at 1,901,070 to 1,902,434 _1540 DvMF_1541: DvMF_1541 - TrkA-N domain protein (RefSeq), at 1,902,471 to 1,903,136 _1541 DvMF_1542: DvMF_1542 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,903,359 to 1,904,237 _1542 DvMF_1543: DvMF_1543 - rare lipoprotein A (RefSeq), at 1,904,584 to 1,905,237 _1543 Position (kb) 1903 1904 1905Strain fitness (log2 ratio) -1 0 1at 1902.526 kb on + strandat 1902.546 kb on - strand, within DvMF_1541at 1902.619 kb on - strand, within DvMF_1541at 1903.165 kb on - strandat 1903.186 kb on - strandat 1903.316 kb on - strandat 1903.755 kb on + strand, within DvMF_1542at 1903.781 kb on - strand, within DvMF_1542at 1903.797 kb on - strand, within DvMF_1542at 1903.808 kb on - strand, within DvMF_1542at 1903.888 kb on + strand, within DvMF_1542at 1903.896 kb on - strand, within DvMF_1542at 1904.249 kb on - strandat 1904.447 kb on - strandat 1904.936 kb on + strand, within DvMF_1543

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml
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1,902,526 + -0.0
1,902,546 - DvMF_1541 0.11 -0.7
1,902,619 - DvMF_1541 0.22 -0.4
1,903,165 - -0.3
1,903,186 - -1.2
1,903,316 - -0.3
1,903,755 + DvMF_1542 0.45 -0.0
1,903,781 - DvMF_1542 0.48 -0.3
1,903,797 - DvMF_1542 0.50 -0.3
1,903,808 - DvMF_1542 0.51 -0.9
1,903,888 + DvMF_1542 0.60 +0.1
1,903,896 - DvMF_1542 0.61 -0.2
1,904,249 - -0.6
1,904,447 - -0.0
1,904,936 + DvMF_1543 0.54 +0.4

Or see this region's nucleotide sequence