Experiment: MoYLS4 with Gentamicin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1077 and DvMF_1078 are separated by 467 nucleotides DvMF_1078 and DvMF_1079 overlap by 4 nucleotides DvMF_1079 and DvMF_1080 are separated by 143 nucleotides
DvMF_1077: DvMF_1077 - hypothetical protein (RefSeq), at 1,317,524 to 1,318,327
_1077
DvMF_1078: DvMF_1078 - hypothetical protein (RefSeq), at 1,318,795 to 1,319,331
_1078
DvMF_1079: DvMF_1079 - hypothetical protein (RefSeq), at 1,319,328 to 1,319,684
_1079
DvMF_1080: DvMF_1080 - hypothetical protein (RefSeq), at 1,319,828 to 1,320,598
_1080
Position (kb)
1318
1319
1320 Strain fitness (log2 ratio)
-2
-1
0
1 at 1318.070 kb on - strand, within DvMF_1077 at 1318.373 kb on + strand at 1318.378 kb on + strand at 1318.413 kb on - strand at 1318.508 kb on - strand at 1318.701 kb on - strand at 1318.970 kb on + strand, within DvMF_1078 at 1319.042 kb on - strand, within DvMF_1078 at 1319.084 kb on + strand, within DvMF_1078 at 1319.106 kb on - strand, within DvMF_1078 at 1319.108 kb on + strand, within DvMF_1078 at 1319.298 kb on - strand at 1319.306 kb on + strand at 1319.478 kb on + strand, within DvMF_1079 at 1319.735 kb on + strand at 1319.814 kb on - strand at 1319.908 kb on + strand, within DvMF_1080 at 1319.982 kb on - strand, within DvMF_1080 at 1320.016 kb on - strand, within DvMF_1080 at 1320.065 kb on - strand, within DvMF_1080 at 1320.110 kb on + strand, within DvMF_1080 at 1320.110 kb on + strand, within DvMF_1080 at 1320.146 kb on - strand, within DvMF_1080 at 1320.232 kb on - strand, within DvMF_1080 at 1320.233 kb on - strand, within DvMF_1080
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml remove 1,318,070 - DvMF_1077 0.68 -2.1 1,318,373 + -0.4 1,318,378 + -0.1 1,318,413 - -0.5 1,318,508 - +0.3 1,318,701 - -0.8 1,318,970 + DvMF_1078 0.33 -0.8 1,319,042 - DvMF_1078 0.46 -0.4 1,319,084 + DvMF_1078 0.54 -0.3 1,319,106 - DvMF_1078 0.58 +0.3 1,319,108 + DvMF_1078 0.58 +0.2 1,319,298 - +0.6 1,319,306 + -0.3 1,319,478 + DvMF_1079 0.42 -0.8 1,319,735 + -0.7 1,319,814 - -0.4 1,319,908 + DvMF_1080 0.10 -1.2 1,319,982 - DvMF_1080 0.20 -0.7 1,320,016 - DvMF_1080 0.24 -0.6 1,320,065 - DvMF_1080 0.31 -0.5 1,320,110 + DvMF_1080 0.37 -0.1 1,320,110 + DvMF_1080 0.37 -0.6 1,320,146 - DvMF_1080 0.41 -0.5 1,320,232 - DvMF_1080 0.52 -0.2 1,320,233 - DvMF_1080 0.53 +0.2
Or see this region's nucleotide sequence