Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0034

Experiment: MoYLS4 with Gentamicin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_R0031 and DvMF_R0032 are separated by 168 nucleotidesDvMF_R0032 and DvMF_R0033 are separated by 33 nucleotidesDvMF_R0033 and DvMF_R0034 are separated by 112 nucleotidesDvMF_R0034 and DvMF_1051 are separated by 604 nucleotides DvMF_R0031: DvMF_R0031 - 23S ribosomal RNA (RefSeq), at 1,278,337 to 1,281,262 _R0031 DvMF_R0032: DvMF_R0032 - tRNA-Ala (RefSeq), at 1,281,431 to 1,281,506 _R0032 DvMF_R0033: DvMF_R0033 - tRNA-Ile (RefSeq), at 1,281,540 to 1,281,616 _R0033 DvMF_R0034: DvMF_R0034 - 16S ribosomal RNA (RefSeq), at 1,281,729 to 1,283,264 _R0034 DvMF_1051: DvMF_1051 - TPR repeat-containing protein (RefSeq), at 1,283,869 to 1,284,516 _1051 Position (kb) 1281 1282 1283 1284Strain fitness (log2 ratio) -1 0 1at 1283.789 kb on - strandat 1283.789 kb on - strandat 1284.126 kb on + strand, within DvMF_1051

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml
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1,283,789 - -0.2
1,283,789 - -0.5
1,284,126 + DvMF_1051 0.40 +0.8

Or see this region's nucleotide sequence