Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1020

Experiment: MoYLS4 with Gentamicin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1019 and DvMF_1020 are separated by 75 nucleotidesDvMF_1020 and DvMF_1021 are separated by 318 nucleotides DvMF_1019: DvMF_1019 - peptidase dimerisation domain protein (RefSeq), at 1,235,111 to 1,236,346 _1019 DvMF_1020: DvMF_1020 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 1,236,422 to 1,237,498 _1020 DvMF_1021: DvMF_1021 - two component transcriptional regulator, LuxR family (RefSeq), at 1,237,817 to 1,238,467 _1021 Position (kb) 1236 1237 1238Strain fitness (log2 ratio) -1 0 1at 1235.431 kb on + strand, within DvMF_1019at 1235.673 kb on - strand, within DvMF_1019at 1235.898 kb on - strand, within DvMF_1019at 1235.973 kb on + strand, within DvMF_1019at 1236.008 kb on - strand, within DvMF_1019at 1236.234 kb on - strandat 1236.341 kb on + strandat 1236.406 kb on + strandat 1236.523 kb on + strandat 1236.592 kb on + strand, within DvMF_1020at 1236.798 kb on - strand, within DvMF_1020at 1236.991 kb on - strand, within DvMF_1020at 1237.227 kb on + strand, within DvMF_1020at 1237.680 kb on - strandat 1237.866 kb on + strandat 1237.875 kb on - strandat 1238.352 kb on - strand, within DvMF_1021at 1238.364 kb on - strand, within DvMF_1021at 1238.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml
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1,235,431 + DvMF_1019 0.26 -0.1
1,235,673 - DvMF_1019 0.45 -0.2
1,235,898 - DvMF_1019 0.64 -0.3
1,235,973 + DvMF_1019 0.70 -0.4
1,236,008 - DvMF_1019 0.73 -0.8
1,236,234 - -0.4
1,236,341 + -0.7
1,236,406 + +1.5
1,236,523 + -0.9
1,236,592 + DvMF_1020 0.16 -0.6
1,236,798 - DvMF_1020 0.35 -1.6
1,236,991 - DvMF_1020 0.53 -0.7
1,237,227 + DvMF_1020 0.75 -0.9
1,237,680 - -0.7
1,237,866 + +0.7
1,237,875 - +0.8
1,238,352 - DvMF_1021 0.82 -0.2
1,238,364 - DvMF_1021 0.84 -0.6
1,238,423 - -0.9

Or see this region's nucleotide sequence