Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0852

Experiment: MoYLS4 with Gentamicin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0851 and DvMF_0852 are separated by 160 nucleotidesDvMF_0852 and DvMF_0853 are separated by 12 nucleotidesDvMF_0853 and DvMF_0854 are separated by 108 nucleotides DvMF_0851: DvMF_0851 - Sporulation domain protein (RefSeq), at 1,029,357 to 1,030,292 _0851 DvMF_0852: DvMF_0852 - protein of unknown function DUF140 (RefSeq), at 1,030,453 to 1,031,256 _0852 DvMF_0853: DvMF_0853 - ABC transporter related (RefSeq), at 1,031,269 to 1,032,090 _0853 DvMF_0854: DvMF_0854 - Mammalian cell entry related domain protein (RefSeq), at 1,032,199 to 1,032,645 _0854 Position (kb) 1030 1031 1032Strain fitness (log2 ratio) -3 -2 -1 0 1at 1029.724 kb on - strand, within DvMF_0851at 1029.814 kb on - strand, within DvMF_0851at 1030.190 kb on + strand, within DvMF_0851at 1030.372 kb on - strandat 1030.476 kb on - strandat 1030.680 kb on - strand, within DvMF_0852at 1030.988 kb on + strand, within DvMF_0852at 1030.996 kb on - strand, within DvMF_0852at 1031.040 kb on - strand, within DvMF_0852at 1031.557 kb on - strand, within DvMF_0853at 1031.562 kb on - strand, within DvMF_0853

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml
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1,029,724 - DvMF_0851 0.39 -1.4
1,029,814 - DvMF_0851 0.49 -0.3
1,030,190 + DvMF_0851 0.89 -2.6
1,030,372 - -2.2
1,030,476 - -3.5
1,030,680 - DvMF_0852 0.28 -2.0
1,030,988 + DvMF_0852 0.67 -1.1
1,030,996 - DvMF_0852 0.68 -2.2
1,031,040 - DvMF_0852 0.73 -2.8
1,031,557 - DvMF_0853 0.35 -1.4
1,031,562 - DvMF_0853 0.36 -2.5

Or see this region's nucleotide sequence