Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0504

Experiment: MoYLS4 with Gentamicin 0.03 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0503 and DvMF_0504 are separated by 133 nucleotidesDvMF_0504 and DvMF_0505 are separated by 171 nucleotides DvMF_0503: DvMF_0503 - elongation factor G (RefSeq), at 589,535 to 591,631 _0503 DvMF_0504: DvMF_0504 - hypothetical protein (RefSeq), at 591,765 to 592,781 _0504 DvMF_0505: DvMF_0505 - hypothetical protein (RefSeq), at 592,953 to 594,203 _0505 Position (kb) 591 592 593Strain fitness (log2 ratio) -1 0 1at 590.783 kb on - strand, within DvMF_0503at 590.925 kb on - strand, within DvMF_0503at 591.161 kb on - strand, within DvMF_0503at 591.292 kb on - strand, within DvMF_0503at 591.376 kb on - strand, within DvMF_0503at 591.441 kb on + strandat 591.509 kb on - strandat 591.548 kb on - strandat 591.701 kb on - strandat 592.890 kb on + strandat 593.016 kb on - strandat 593.305 kb on - strand, within DvMF_0505at 593.505 kb on + strand, within DvMF_0505

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml
remove
590,783 - DvMF_0503 0.60 -0.2
590,925 - DvMF_0503 0.66 +0.6
591,161 - DvMF_0503 0.78 +0.3
591,292 - DvMF_0503 0.84 -0.4
591,376 - DvMF_0503 0.88 -0.4
591,441 + -1.2
591,509 - -0.5
591,548 - +0.0
591,701 - -0.3
592,890 + -0.8
593,016 - -0.4
593,305 - DvMF_0505 0.28 -0.7
593,505 + DvMF_0505 0.44 -1.1

Or see this region's nucleotide sequence