Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0502

Experiment: MoYLS4 with Gentamicin 0.03 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntksgA and DvMF_0502 are separated by 197 nucleotidesDvMF_0502 and DvMF_0503 are separated by 57 nucleotides DvMF_0501: ksgA - dimethyladenosine transferase (RefSeq), at 587,835 to 588,647 ksgA DvMF_0502: DvMF_0502 - hypothetical protein (RefSeq), at 588,845 to 589,477 _0502 DvMF_0503: DvMF_0503 - elongation factor G (RefSeq), at 589,535 to 591,631 _0503 Position (kb) 588 589 590Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 588.137 kb on + strand, within ksgAat 588.792 kb on + strandat 589.392 kb on - strand, within DvMF_0502at 589.458 kb on + strandat 589.491 kb on + strandat 589.662 kb on - strandat 589.788 kb on + strand, within DvMF_0503at 589.788 kb on + strand, within DvMF_0503at 589.796 kb on - strand, within DvMF_0503at 589.796 kb on - strand, within DvMF_0503at 589.796 kb on - strand, within DvMF_0503at 589.806 kb on - strand, within DvMF_0503at 589.902 kb on + strand, within DvMF_0503at 589.908 kb on + strand, within DvMF_0503at 589.910 kb on - strand, within DvMF_0503at 589.915 kb on - strand, within DvMF_0503at 589.915 kb on - strand, within DvMF_0503at 589.916 kb on - strand, within DvMF_0503at 589.938 kb on + strand, within DvMF_0503at 590.129 kb on - strand, within DvMF_0503at 590.156 kb on + strand, within DvMF_0503at 590.231 kb on + strand, within DvMF_0503at 590.400 kb on + strand, within DvMF_0503at 590.418 kb on - strand, within DvMF_0503

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml
remove
588,137 + ksgA DvMF_0501 0.37 -4.3
588,792 + -2.8
589,392 - DvMF_0502 0.86 -0.5
589,458 + -0.8
589,491 + -0.3
589,662 - +0.2
589,788 + DvMF_0503 0.12 +0.6
589,788 + DvMF_0503 0.12 -0.6
589,796 - DvMF_0503 0.12 -0.8
589,796 - DvMF_0503 0.12 +0.8
589,796 - DvMF_0503 0.12 -0.4
589,806 - DvMF_0503 0.13 -0.3
589,902 + DvMF_0503 0.18 -0.6
589,908 + DvMF_0503 0.18 -0.1
589,910 - DvMF_0503 0.18 -0.1
589,915 - DvMF_0503 0.18 +0.6
589,915 - DvMF_0503 0.18 +0.4
589,916 - DvMF_0503 0.18 -0.1
589,938 + DvMF_0503 0.19 -0.0
590,129 - DvMF_0503 0.28 -0.7
590,156 + DvMF_0503 0.30 -1.1
590,231 + DvMF_0503 0.33 -1.4
590,400 + DvMF_0503 0.41 -0.7
590,418 - DvMF_0503 0.42 +1.0

Or see this region's nucleotide sequence