Experiment: MoYLS4 with Gentamicin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0213 and DvMF_0214 overlap by 4 nucleotides DvMF_0214 and DvMF_0215 are separated by 29 nucleotides DvMF_0215 and DvMF_0216 are separated by 17 nucleotides DvMF_0216 and DvMF_0217 are separated by 289 nucleotides
DvMF_0213: DvMF_0213 - multi-sensor signal transduction histidine kinase (RefSeq), at 239,751 to 241,919
_0213
DvMF_0214: DvMF_0214 - no description, at 241,916 to 241,990
_0214
DvMF_0215: DvMF_0215 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 242,020 to 243,606
_0215
DvMF_0216: DvMF_0216 - hypothetical protein (RefSeq), at 243,624 to 244,205
_0216
DvMF_0217: DvMF_0217 - Hpt protein (RefSeq), at 244,495 to 244,860
_0217
Position (kb) 242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 241.087 kb on + strand, within DvMF_0213 at 241.135 kb on + strand, within DvMF_0213 at 241.218 kb on - strand, within DvMF_0213 at 241.296 kb on + strand, within DvMF_0213 at 241.304 kb on - strand, within DvMF_0213 at 241.304 kb on - strand, within DvMF_0213 at 241.350 kb on - strand, within DvMF_0213 at 241.666 kb on + strand, within DvMF_0213 at 241.673 kb on - strand, within DvMF_0213 at 241.745 kb on + strand at 242.151 kb on - strand at 242.229 kb on + strand, within DvMF_0215 at 242.488 kb on - strand, within DvMF_0215 at 242.523 kb on - strand, within DvMF_0215 at 242.620 kb on + strand, within DvMF_0215 at 242.623 kb on - strand, within DvMF_0215 at 242.623 kb on - strand, within DvMF_0215 at 242.661 kb on + strand, within DvMF_0215 at 242.676 kb on + strand, within DvMF_0215 at 242.706 kb on + strand, within DvMF_0215 at 242.791 kb on + strand, within DvMF_0215 at 242.797 kb on - strand, within DvMF_0215 at 243.239 kb on - strand, within DvMF_0215 at 243.246 kb on - strand, within DvMF_0215 at 243.248 kb on + strand, within DvMF_0215 at 243.350 kb on - strand, within DvMF_0215 at 243.540 kb on + strand at 243.660 kb on - strand at 243.764 kb on - strand, within DvMF_0216 at 243.819 kb on + strand, within DvMF_0216 at 243.822 kb on - strand, within DvMF_0216 at 244.300 kb on - strand at 244.512 kb on - strand at 244.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.03 mg/ml remove 241,087 + DvMF_0213 0.62 +3.6 241,135 + DvMF_0213 0.64 -2.0 241,218 - DvMF_0213 0.68 -3.3 241,296 + DvMF_0213 0.71 -2.2 241,304 - DvMF_0213 0.72 -1.8 241,304 - DvMF_0213 0.72 -3.2 241,350 - DvMF_0213 0.74 -1.9 241,666 + DvMF_0213 0.88 -0.8 241,673 - DvMF_0213 0.89 -1.0 241,745 + -0.3 242,151 - -1.8 242,229 + DvMF_0215 0.13 -2.1 242,488 - DvMF_0215 0.29 -2.1 242,523 - DvMF_0215 0.32 -3.0 242,620 + DvMF_0215 0.38 -1.8 242,623 - DvMF_0215 0.38 -2.4 242,623 - DvMF_0215 0.38 -3.6 242,661 + DvMF_0215 0.40 -2.1 242,676 + DvMF_0215 0.41 -1.5 242,706 + DvMF_0215 0.43 -2.3 242,791 + DvMF_0215 0.49 -1.9 242,797 - DvMF_0215 0.49 -2.3 243,239 - DvMF_0215 0.77 -2.4 243,246 - DvMF_0215 0.77 -2.7 243,248 + DvMF_0215 0.77 -1.1 243,350 - DvMF_0215 0.84 -2.3 243,540 + -1.2 243,660 - +0.4 243,764 - DvMF_0216 0.24 -0.6 243,819 + DvMF_0216 0.34 -0.0 243,822 - DvMF_0216 0.34 -0.9 244,300 - -0.7 244,512 - -0.4 244,513 - -0.5
Or see this region's nucleotide sequence