Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4038 and Shewana3_4039 are separated by 154 nucleotides Shewana3_4039 and Shewana3_4040 overlap by 1 nucleotides Shewana3_4040 and Shewana3_4041 are separated by 50 nucleotides
Shewana3_4038: Shewana3_4038 - hypothetical protein (RefSeq), at 4,851,980 to 4,852,825
_4038
Shewana3_4039: Shewana3_4039 - lytic transglycosylase, catalytic (RefSeq), at 4,852,980 to 4,853,699
_4039
Shewana3_4040: Shewana3_4040 - hypothetical protein (RefSeq), at 4,853,699 to 4,854,727
_4040
Shewana3_4041: Shewana3_4041 - LemA family protein (RefSeq), at 4,854,778 to 4,855,344
_4041
Position (kb)
4853
4854
4855 Strain fitness (log2 ratio)
-2
-1
0
1 at 4852.708 kb on - strand, within Shewana3_4038 at 4852.993 kb on - strand at 4853.067 kb on + strand, within Shewana3_4039 at 4853.117 kb on - strand, within Shewana3_4039 at 4853.315 kb on + strand, within Shewana3_4039 at 4853.417 kb on - strand, within Shewana3_4039 at 4853.536 kb on + strand, within Shewana3_4039 at 4853.544 kb on - strand, within Shewana3_4039 at 4853.544 kb on - strand, within Shewana3_4039 at 4853.765 kb on + strand at 4853.771 kb on - strand at 4853.923 kb on + strand, within Shewana3_4040 at 4853.957 kb on + strand, within Shewana3_4040 at 4854.151 kb on + strand, within Shewana3_4040 at 4854.206 kb on - strand, within Shewana3_4040 at 4854.208 kb on + strand, within Shewana3_4040 at 4854.449 kb on - strand, within Shewana3_4040 at 4854.488 kb on + strand, within Shewana3_4040 at 4854.569 kb on - strand, within Shewana3_4040 at 4854.639 kb on - strand at 4854.842 kb on + strand, within Shewana3_4041 at 4854.842 kb on + strand, within Shewana3_4041 at 4854.842 kb on + strand, within Shewana3_4041 at 4854.842 kb on + strand, within Shewana3_4041 at 4854.850 kb on - strand, within Shewana3_4041 at 4855.458 kb on + strand at 4855.458 kb on + strand at 4855.466 kb on - strand at 4855.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,852,708 - Shewana3_4038 0.86 +0.5 4,852,993 - +0.4 4,853,067 + Shewana3_4039 0.12 -0.8 4,853,117 - Shewana3_4039 0.19 -0.8 4,853,315 + Shewana3_4039 0.47 -1.1 4,853,417 - Shewana3_4039 0.61 +0.5 4,853,536 + Shewana3_4039 0.77 -0.6 4,853,544 - Shewana3_4039 0.78 -0.1 4,853,544 - Shewana3_4039 0.78 +0.2 4,853,765 + -0.5 4,853,771 - -0.3 4,853,923 + Shewana3_4040 0.22 +0.0 4,853,957 + Shewana3_4040 0.25 +0.3 4,854,151 + Shewana3_4040 0.44 +0.3 4,854,206 - Shewana3_4040 0.49 +0.8 4,854,208 + Shewana3_4040 0.49 +0.8 4,854,449 - Shewana3_4040 0.73 -1.0 4,854,488 + Shewana3_4040 0.77 -0.5 4,854,569 - Shewana3_4040 0.85 +0.5 4,854,639 - +0.3 4,854,842 + Shewana3_4041 0.11 +0.2 4,854,842 + Shewana3_4041 0.11 +0.8 4,854,842 + Shewana3_4041 0.11 +0.9 4,854,842 + Shewana3_4041 0.11 -0.4 4,854,850 - Shewana3_4041 0.13 +0.3 4,855,458 + +0.4 4,855,458 + +0.2 4,855,466 - +0.0 4,855,714 - -2.4
Or see this region's nucleotide sequence