Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3906 and Shewana3_3907 overlap by 1 nucleotides Shewana3_3907 and Shewana3_3908 are separated by 97 nucleotides
Shewana3_3906: Shewana3_3906 - phosphoenolpyruvate carboxylase (RefSeq), at 4,687,214 to 4,689,883
_3906
Shewana3_3907: Shewana3_3907 - hypothetical protein (RefSeq), at 4,689,883 to 4,690,428
_3907
Shewana3_3908: Shewana3_3908 - competence/damage-inducible protein CinA (RefSeq), at 4,690,526 to 4,691,803
_3908
Position (kb)
4689
4690
4691 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4688.925 kb on - strand, within Shewana3_3906 at 4688.929 kb on - strand, within Shewana3_3906 at 4689.116 kb on + strand, within Shewana3_3906 at 4689.116 kb on + strand, within Shewana3_3906 at 4689.128 kb on + strand, within Shewana3_3906 at 4689.136 kb on - strand, within Shewana3_3906 at 4689.138 kb on + strand, within Shewana3_3906 at 4689.307 kb on + strand, within Shewana3_3906 at 4689.648 kb on + strand at 4689.904 kb on - strand at 4689.904 kb on - strand at 4690.207 kb on - strand, within Shewana3_3907 at 4690.261 kb on + strand, within Shewana3_3907 at 4690.352 kb on - strand, within Shewana3_3907 at 4690.508 kb on - strand at 4690.508 kb on - strand at 4690.615 kb on + strand at 4691.166 kb on - strand, within Shewana3_3908
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,688,925 - Shewana3_3906 0.64 -3.2 4,688,929 - Shewana3_3906 0.64 -2.5 4,689,116 + Shewana3_3906 0.71 -3.4 4,689,116 + Shewana3_3906 0.71 -3.0 4,689,128 + Shewana3_3906 0.72 -3.3 4,689,136 - Shewana3_3906 0.72 -3.5 4,689,138 + Shewana3_3906 0.72 -3.3 4,689,307 + Shewana3_3906 0.78 -2.5 4,689,648 + -3.8 4,689,904 - -0.3 4,689,904 - +0.5 4,690,207 - Shewana3_3907 0.59 +0.5 4,690,261 + Shewana3_3907 0.69 +0.9 4,690,352 - Shewana3_3907 0.86 -0.8 4,690,508 - +1.3 4,690,508 - -0.4 4,690,615 + +0.9 4,691,166 - Shewana3_3908 0.50 +0.5
Or see this region's nucleotide sequence