Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3614 and Shewana3_3615 are separated by 204 nucleotides Shewana3_3615 and Shewana3_3616 are separated by 107 nucleotides Shewana3_3616 and Shewana3_3617 are separated by 122 nucleotides
Shewana3_3614: Shewana3_3614 - cystathionine gamma-synthase (RefSeq), at 4,340,806 to 4,341,987
_3614
Shewana3_3615: Shewana3_3615 - transcriptional repressor protein MetJ (RefSeq), at 4,342,192 to 4,342,506
_3615
Shewana3_3616: Shewana3_3616 - hypothetical protein (RefSeq), at 4,342,614 to 4,343,357
_3616
Shewana3_3617: Shewana3_3617 - polysulphide reductase, NrfD (RefSeq), at 4,343,480 to 4,344,424
_3617
Position (kb)
4342
4343 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 4341.199 kb on + strand, within Shewana3_3614 at 4341.222 kb on + strand, within Shewana3_3614 at 4341.254 kb on - strand, within Shewana3_3614 at 4341.279 kb on + strand, within Shewana3_3614 at 4341.287 kb on - strand, within Shewana3_3614 at 4341.326 kb on - strand, within Shewana3_3614 at 4341.346 kb on + strand, within Shewana3_3614 at 4341.351 kb on + strand, within Shewana3_3614 at 4341.434 kb on + strand, within Shewana3_3614 at 4341.441 kb on + strand, within Shewana3_3614 at 4341.532 kb on - strand, within Shewana3_3614 at 4341.542 kb on + strand, within Shewana3_3614 at 4341.572 kb on - strand, within Shewana3_3614 at 4341.579 kb on - strand, within Shewana3_3614 at 4341.756 kb on + strand, within Shewana3_3614 at 4341.787 kb on + strand, within Shewana3_3614 at 4341.910 kb on - strand at 4341.939 kb on + strand at 4341.994 kb on + strand at 4342.141 kb on + strand at 4342.234 kb on - strand, within Shewana3_3615 at 4342.334 kb on + strand, within Shewana3_3615 at 4342.470 kb on - strand, within Shewana3_3615 at 4342.509 kb on - strand at 4342.672 kb on - strand at 4342.696 kb on + strand, within Shewana3_3616 at 4342.704 kb on - strand, within Shewana3_3616 at 4342.704 kb on - strand, within Shewana3_3616 at 4342.727 kb on + strand, within Shewana3_3616 at 4342.730 kb on + strand, within Shewana3_3616 at 4342.858 kb on - strand, within Shewana3_3616 at 4343.109 kb on + strand, within Shewana3_3616 at 4343.230 kb on + strand, within Shewana3_3616 at 4343.230 kb on + strand, within Shewana3_3616 at 4343.287 kb on + strand at 4343.287 kb on + strand at 4343.287 kb on + strand at 4343.287 kb on + strand at 4343.295 kb on - strand at 4343.295 kb on - strand at 4343.295 kb on - strand at 4343.311 kb on + strand at 4343.492 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,341,199 + Shewana3_3614 0.33 -3.3 4,341,222 + Shewana3_3614 0.35 -3.0 4,341,254 - Shewana3_3614 0.38 -4.9 4,341,279 + Shewana3_3614 0.40 -4.2 4,341,287 - Shewana3_3614 0.41 -3.8 4,341,326 - Shewana3_3614 0.44 -5.2 4,341,346 + Shewana3_3614 0.46 -5.2 4,341,351 + Shewana3_3614 0.46 -5.1 4,341,434 + Shewana3_3614 0.53 -3.8 4,341,441 + Shewana3_3614 0.54 -5.6 4,341,532 - Shewana3_3614 0.61 -3.6 4,341,542 + Shewana3_3614 0.62 -1.1 4,341,572 - Shewana3_3614 0.65 -2.4 4,341,579 - Shewana3_3614 0.65 -4.7 4,341,756 + Shewana3_3614 0.80 -1.1 4,341,787 + Shewana3_3614 0.83 -1.7 4,341,910 - -5.2 4,341,939 + -5.2 4,341,994 + -3.6 4,342,141 + +0.3 4,342,234 - Shewana3_3615 0.13 -1.2 4,342,334 + Shewana3_3615 0.45 +1.3 4,342,470 - Shewana3_3615 0.88 -1.4 4,342,509 - +0.6 4,342,672 - -1.1 4,342,696 + Shewana3_3616 0.11 -1.0 4,342,704 - Shewana3_3616 0.12 +0.1 4,342,704 - Shewana3_3616 0.12 +0.2 4,342,727 + Shewana3_3616 0.15 -0.0 4,342,730 + Shewana3_3616 0.16 +0.4 4,342,858 - Shewana3_3616 0.33 +0.9 4,343,109 + Shewana3_3616 0.67 +0.6 4,343,230 + Shewana3_3616 0.83 +0.3 4,343,230 + Shewana3_3616 0.83 -1.2 4,343,287 + +0.2 4,343,287 + +1.2 4,343,287 + +0.5 4,343,287 + +0.0 4,343,295 - +0.7 4,343,295 - +0.3 4,343,295 - +0.5 4,343,311 + -0.1 4,343,492 + -0.5
Or see this region's nucleotide sequence