Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3503 and Shewana3_3504 are separated by 122 nucleotides Shewana3_3504 and Shewana3_3505 are separated by 225 nucleotides Shewana3_3505 and Shewana3_3506 are separated by 303 nucleotides
Shewana3_3503: Shewana3_3503 - 2-octaprenyl-6-methoxyphenol hydroxylase / 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (RefSeq), at 4,204,423 to 4,205,628
_3503
Shewana3_3504: Shewana3_3504 - yecA family protein (RefSeq), at 4,205,751 to 4,206,326
_3504
Shewana3_3505: Shewana3_3505 - cell division protein ZapA (RefSeq), at 4,206,552 to 4,206,854
_3505
Shewana3_3506: Shewana3_3506 - 5-formyltetrahydrofolate cyclo-ligase (RefSeq), at 4,207,158 to 4,207,835
_3506
Position (kb) 4206
4207 Strain fitness (log2 ratio) -2
-1
0
1 at 4205.728 kb on - strand at 4206.206 kb on - strand, within Shewana3_3504 at 4206.227 kb on - strand, within Shewana3_3504 at 4206.464 kb on + strand at 4206.492 kb on + strand at 4206.504 kb on + strand at 4206.504 kb on + strand at 4206.504 kb on + strand at 4206.540 kb on + strand at 4206.649 kb on + strand, within Shewana3_3505 at 4206.649 kb on + strand, within Shewana3_3505 at 4206.662 kb on + strand, within Shewana3_3505 at 4206.670 kb on - strand, within Shewana3_3505 at 4206.854 kb on + strand at 4206.854 kb on + strand at 4206.854 kb on + strand at 4206.884 kb on + strand at 4207.112 kb on + strand at 4207.254 kb on + strand, within Shewana3_3506 at 4207.334 kb on - strand, within Shewana3_3506 at 4207.461 kb on + strand, within Shewana3_3506 at 4207.490 kb on + strand, within Shewana3_3506 at 4207.719 kb on + strand, within Shewana3_3506 at 4207.810 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,205,728 - -0.0 4,206,206 - Shewana3_3504 0.79 +0.3 4,206,227 - Shewana3_3504 0.83 +0.5 4,206,464 + +0.4 4,206,492 + +0.5 4,206,504 + -0.9 4,206,504 + -0.4 4,206,504 + +0.7 4,206,540 + +0.3 4,206,649 + Shewana3_3505 0.32 +0.6 4,206,649 + Shewana3_3505 0.32 +0.6 4,206,662 + Shewana3_3505 0.36 +1.3 4,206,670 - Shewana3_3505 0.39 -0.4 4,206,854 + +0.3 4,206,854 + -0.0 4,206,854 + +0.2 4,206,884 + +0.3 4,207,112 + +0.2 4,207,254 + Shewana3_3506 0.14 +0.4 4,207,334 - Shewana3_3506 0.26 +0.2 4,207,461 + Shewana3_3506 0.45 -1.8 4,207,490 + Shewana3_3506 0.49 -2.2 4,207,719 + Shewana3_3506 0.83 +0.6 4,207,810 - -0.2
Or see this region's nucleotide sequence